PubMed

BowTieBuilder: modeling signal transduction pathways.

Supper J, Spangenberg L, Planatscher H, Dräger A, Schröder A, Zell A.

BMC Syst Biol. 2009 Jun 30;3:67.PMID: 19566957 [PubMed - indexed for MEDLINE]Related articlesFree article

Quantitative inference of dynamic regulatory pathways via microarray data.

Chang WC, Li CW, Chen BS.

BMC Bioinformatics. 2005 Mar 7;6:44.PMID: 15748298 [PubMed - indexed for MEDLINE]Related articlesFree article

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Bioinformatics. 2008 Apr 21;9:203.PMID: 18426580 [PubMed - indexed for MEDLINE]Related articlesFree article

Automated modelling of signal transduction networks.

Steffen M, Petti A, Aach J, D'haeseleer P, Church G.

BMC Bioinformatics. 2002 Nov 1;3:34.PMID: 12413400 [PubMed - indexed for MEDLINE]Related articlesFree article

PathFinder: mining signal transduction pathway segments from protein-protein interaction networks.

Bebek G, Yang J.

BMC Bioinformatics. 2007 Sep 13;8:335.PMID: 17854489 [PubMed - indexed for MEDLINE]Related articlesFree article

A computational approach for ordering signal transduction pathway components from genomics and proteomics Data.

Liu Y, Zhao H.

BMC Bioinformatics. 2004 Oct 25;5:158.PMID: 15504238 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovering signal transduction networks using signaling domain-domain interactions.

Nguyen TP, Ho TB.

Genome Inform. 2006;17(2):35-45.PMID: 17503377 [PubMed - indexed for MEDLINE]Related articles

Signal transduction and the Ets family of transcription factors.

Yordy JS, Muise-Helmericks RC.

Oncogene. 2000 Dec 18;19(55):6503-13. Review.PMID: 11175366 [PubMed - indexed for MEDLINE]Related articlesFree article

Uncovering signal transduction networks from high-throughput data by integer linear programming.

Zhao XM, Wang RS, Chen L, Aihara K.

Nucleic Acids Res. 2008 May;36(9):e48. Epub 2008 Apr 13.PMID: 18411207 [PubMed - indexed for MEDLINE]Related articlesFree article

Function and regulation in MAPK signaling pathways: lessons learned from the yeast Saccharomyces cerevisiae.

Chen RE, Thorner J.

Biochim Biophys Acta. 2007 Aug;1773(8):1311-40. Epub 2007 May 22. Review.PMID: 17604854 [PubMed - indexed for MEDLINE]Related articlesFree article

Refinement and expansion of signaling pathways: the osmotic response network in yeast.

Gat-Viks I, Shamir R.

Genome Res. 2007 Mar;17(3):358-67. Epub 2007 Jan 31.PMID: 17267811 [PubMed - indexed for MEDLINE]Related articlesFree article

A copula method for modeling directional dependence of genes.

Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

BMC Bioinformatics. 2008 May 1;9:225.PMID: 18447957 [PubMed - indexed for MEDLINE]Related articlesFree article

Ensemble modeling for analysis of cell signaling dynamics.

Kuepfer L, Peter M, Sauer U, Stelling J.

Nat Biotechnol. 2007 Sep;25(9):1001-6.PMID: 17846631 [PubMed - indexed for MEDLINE]Related articles

Biological Network Inference and analysis using SEBINI and CABIN.

Taylor R, Singhal M.

Methods Mol Biol. 2009;541:551-76. Review.PMID: 19381531 [PubMed - indexed for MEDLINE]Related articles

Regulatory network connecting two glucose signal transduction pathways in Saccharomyces cerevisiae.

Kaniak A, Xue Z, Macool D, Kim JH, Johnston M.

Eukaryot Cell. 2004 Feb;3(1):221-31.PMID: 14871952 [PubMed - indexed for MEDLINE]Related articlesFree article

Information flow analysis of interactome networks.

Missiuro PV, Liu K, Zou L, Ross BC, Zhao G, Liu JS, Ge H.

PLoS Comput Biol. 2009 Apr;5(4):e1000350. Epub 2009 Apr 10.PMID: 19503817 [PubMed - indexed for MEDLINE]Related articlesFree article

Role of the cytoskeleton in signaling networks.

Forgacs G, Yook SH, Janmey PA, Jeong H, Burd CG.

J Cell Sci. 2004 Jun 1;117(Pt 13):2769-75. Epub 2004 May 18.PMID: 15150320 [PubMed - indexed for MEDLINE]Related articlesFree article

Crosstalk between cAMP-PKA and MAP kinase pathways is a key regulatory design necessary to regulate FLO11 expression.

Sengupta N, Vinod PK, Venkatesh KV.

Biophys Chem. 2007 Jan;125(1):59-71. Epub 2006 Jun 27.PMID: 16863676 [PubMed - indexed for MEDLINE]Related articles

Stress and radiation-induced activation of multiple intracellular signaling pathways.

Dent P, Yacoub A, Contessa J, Caron R, Amorino G, Valerie K, Hagan MP, Grant S, Schmidt-Ullrich R.

Radiat Res. 2003 Mar;159(3):283-300. Review.PMID: 12600231 [PubMed - indexed for MEDLINE]Related articles

Signal-transducing protein phosphorylation cascades mediated by Ras/Rho proteins in the mammalian cell: the potential for multiplex signalling.

Denhardt DT.

Biochem J. 1996 Sep 15;318 ( Pt 3):729-47. Review.PMID: 8836113 [PubMed - indexed for MEDLINE]Related articlesFree article