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A systematic design method for robust synthetic biology to satisfy design specifications.

Chen BS, Wu CH.

BMC Syst Biol. 2009 Jun 30;3:66.PMID: 19566953 [PubMed - indexed for MEDLINE]Related articlesFree article

Robust synthetic biology design: stochastic game theory approach.

Chen BS, Chang CH, Lee HC.

Bioinformatics. 2009 Jul 15;25(14):1822-30. Epub 2009 May 12.PMID: 19435742 [PubMed - indexed for MEDLINE]Related articlesFree article

Robust filtering circuit design for stochastic gene networks under intrinsic and extrinsic molecular noises.

Chen BS, Wu WS.

Math Biosci. 2008 Feb;211(2):342-55. Epub 2007 Nov 22.PMID: 18191422 [PubMed - indexed for MEDLINE]Related articles

A systematic molecular circuit design method for gene networks under biochemical time delays and molecular noises.

Chen BS, Chang YT.

BMC Syst Biol. 2008 Nov 27;2:103.PMID: 19038029 [PubMed - indexed for MEDLINE]Related articlesFree article

On the attenuation and amplification of molecular noise in genetic regulatory networks.

Chen BS, Wang YC.

BMC Bioinformatics. 2006 Feb 2;7:52.PMID: 16457708 [PubMed - indexed for MEDLINE]Related articlesFree article

Synthetic tetracycline-inducible regulatory networks: computer-aided design of dynamic phenotypes.

Sotiropoulos V, Kaznessis YN.

BMC Syst Biol. 2007 Jan 9;1:7.PMID: 17408514 [PubMed - indexed for MEDLINE]Related articlesFree article

On the estimation of robustness and filtering ability of dynamic biochemical networks under process delays, internal parametric perturbations and external disturbances.

Chen BS, Chen PW.

Math Biosci. 2009 Dec;222(2):92-108. Epub 2009 Sep 27.PMID: 19788895 [PubMed - in process]Related articles

Robust H infinity-stabilization design in gene networks under stochastic molecular noises: fuzzy-interpolation approach.

Chen BS, Chang YT, Wang YC.

IEEE Trans Syst Man Cybern B Cybern. 2008 Feb;38(1):25-42.PMID: 18270080 [PubMed - indexed for MEDLINE]Related articles

Network evaluation from the consistency of the graph structure with the measured data.

Saito S, Aburatani S, Horimoto K.

BMC Syst Biol. 2008 Oct 1;2:84.PMID: 18828895 [PubMed - indexed for MEDLINE]Related articlesFree article

A new measure of the robustness of biochemical networks.

Chen BS, Wang YC, Wu WS, Li WH.

Bioinformatics. 2005 Jun 1;21(11):2698-705. Epub 2005 Feb 24.PMID: 15731208 [PubMed - indexed for MEDLINE]Related articlesFree article

Optimal enumeration of state space of finitely buffered stochastic molecular networks and exact computation of steady state landscape probability.

Cao Y, Liang J.

BMC Syst Biol. 2008 Mar 29;2:30.PMID: 18373871 [PubMed - indexed for MEDLINE]Related articlesFree article

Designer gene networks: Towards fundamental cellular control.

Hasty J, Isaacs F, Dolnik M, McMillen D, Collins JJ.

Chaos. 2001 Mar;11(1):207-220.PMID: 12779454 [PubMed - as supplied by publisher]Related articles

Synthetic biology: exploring and exploiting genetic modularity through the design of novel biological networks.

Agapakis CM, Silver PA.

Mol Biosyst. 2009 Jul;5(7):704-13. Epub 2009 May 14. Review.PMID: 19562109 [PubMed - indexed for MEDLINE]Related articles

A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches.

Cantone I, Marucci L, Iorio F, Ricci MA, Belcastro V, Bansal M, Santini S, di Bernardo M, di Bernardo D, Cosma MP.

Cell. 2009 Apr 3;137(1):172-81. Epub 2009 Mar 26.PMID: 19327819 [PubMed - indexed for MEDLINE]Related articles

Global stability analysis and robust design of multi-time-scale biological networks under parametric uncertainties.

Meyer-Baese A, Koshkouei AJ, Emmett MR, Goodall DP.

Neural Netw. 2009 Jul-Aug;22(5-6):658-63. Epub 2009 Jul 14.PMID: 19632813 [PubMed - indexed for MEDLINE]Related articles

Efficient, sparse biological network determination.

August E, Papachristodoulou A.

BMC Syst Biol. 2009 Feb 23;3:25.PMID: 19236711 [PubMed - indexed for MEDLINE]Related articlesFree article

Network benchmarking: a happy marriage between systems and synthetic biology.

Minty JJ, Varedi K SM, Nina Lin X.

Chem Biol. 2009 Mar 27;16(3):239-41.PMID: 19318204 [PubMed - indexed for MEDLINE]Related articles

Systems and Synthetic biology: tackling genetic networks and complex diseases.

Cuccato G, Della Gatta G, di Bernardo D.

Heredity. 2009 Jun;102(6):527-32. Epub 2009 Mar 4. Review.PMID: 19259117 [PubMed - indexed for MEDLINE]Related articles

A fast, robust and tunable synthetic gene oscillator.

Stricker J, Cookson S, Bennett MR, Mather WH, Tsimring LS, Hasty J.

Nature. 2008 Nov 27;456(7221):516-9. Epub 2008 Oct 29.PMID: 18971928 [PubMed - indexed for MEDLINE]Related articles

Identification of small scale biochemical networks based on general type system perturbations.

Schmidt H, Cho KH, Jacobsen EW.

FEBS J. 2005 May;272(9):2141-51.PMID: 15853799 [PubMed - indexed for MEDLINE]Related articlesFree article