PubMed

Comparison of two label-free global quantitation methods, APEX and 2D gel electrophoresis, applied to the Shigella dysenteriae proteome.

Kuntumalla S, Braisted JC, Huang ST, Parmar PP, Clark DJ, Alami H, Zhang Q, Donohue-Rolfe A, Tzipori S, Fleischmann RD, Peterson SN, Pieper R.

Proteome Sci. 2009 Jun 29;7:22.PMID: 19563668 [PubMed]Related articlesFree article

The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results.

Braisted JC, Kuntumalla S, Vogel C, Marcotte EM, Rodrigues AR, Wang R, Huang ST, Ferlanti ES, Saeed AI, Fleischmann RD, Peterson SN, Pieper R.

BMC Bioinformatics. 2008 Dec 9;9:529.PMID: 19068132 [PubMed - indexed for MEDLINE]Related articlesFree article

Protein detection and quantitation technologies for gel-based proteome analysis.

Weiss W, Weiland F, Görg A.

Methods Mol Biol. 2009;564:59-82.PMID: 19544017 [PubMed - indexed for MEDLINE]Related articles

LC-MS/MS as an alternative for SDS-PAGE in blue native analysis of protein complexes.

Wessels HJ, Vogel RO, van den Heuvel L, Smeitink JA, Rodenburg RJ, Nijtmans LG, Farhoud MH.

Proteomics. 2009 Sep;9(17):4221-8.PMID: 19688755 [PubMed - indexed for MEDLINE]Related articles

Immobilization of the first dimension in 2D blue native/SDS-PAGE allows the relative quantification of membrane proteomes.

Klepsch M, Schlegel S, Wickström D, Friso G, van Wijk KJ, Persson JO, de Gier JW, Wagner S.

Methods. 2008 Oct;46(2):48-53. Epub 2008 Jul 30.PMID: 18674622 [PubMed - indexed for MEDLINE]Related articles

Proteome analysis of the moss Physcomitrella patens (Hedw.) B.S.G.

Skripnikov AY, Polyakov NB, Tolcheva EV, Velikodvorskaya VV, Dolgov SV, Demina IA, Rogova MA, Govorun VM.

Biochemistry (Mosc). 2009 May;74(5):480-90.PMID: 19538121 [PubMed - indexed for MEDLINE]Related articles

Workflow Comparison for Label-Free, Quantitative Secretome Proteomics for Cancer Biomarker Discovery: Method Evaluation, Differential Analysis, and Verification in Serum.

Piersma SR, Fiedler U, Span S, Lingnau A, Pham TV, Hoffmann S, Kubbutat MH, Jiménez CR.

J Proteome Res. 2010 Feb 12. [Epub ahead of print]PMID: 20085282 [PubMed - as supplied by publisher]Related articles

Comparative serum proteome analysis of human lymph node negative/positive invasive ductal carcinoma of the breast and benign breast disease controls via label-free semiquantitative shotgun technology.

Hu X, Zhang Y, Zhang A, Li Y, Zhu Z, Shao Z, Zeng R, Xu LX.

OMICS. 2009 Aug;13(4):291-300.PMID: 19624269 [PubMed - indexed for MEDLINE]Related articles

Differential quantitative proteomics of Porphyromonas gingivalis by linear ion trap mass spectrometry: non-label methods comparison, q-values and LOWESS curve fitting.

Xia Q, Wang T, Park Y, Lamont RJ, Hackett M.

Int J Mass Spectrom. 2007 Jan 1;259(1-3):105-116.PMID: 19337574 [PubMed]Related articlesFree article

[Efficient protein extraction method from apple leaves for apple proteomic analysis using two-dimensional electrophoresis analysis]

Zeng G, Li C, Zhang X, Teng Y, Dong W.

Se Pu. 2009 Jul;27(4):484-8. Chinese. PMID: 19938509 [PubMed - in process]Related articles

Proteomics of mouse liver microsomes: performance of different protein separation workflows for LC-MS/MS.

Zgoda VG, Moshkovskii SA, Ponomarenko EA, Andreewski TV, Kopylov AT, Tikhonova OV, Melnik SA, Lisitsa AV, Archakov AI.

Proteomics. 2009 Aug;9(16):4102-5.PMID: 19701918 [PubMed - indexed for MEDLINE]Related articles

Integral and peripheral association of proteins and protein complexes with Yersinia pestis inner and outer membranes.

Pieper R, Huang ST, Clark DJ, Robinson JM, Alami H, Parmar PP, Suh MJ, Kuntumalla S, Bunai CL, Perry RD, Fleischmann RD, Peterson SN.

Proteome Sci. 2009 Feb 19;7:5.PMID: 19228400 [PubMed]Related articlesFree article

[Proteome analysis on the mechanism of electroacupuncture in relieving acute spinal cord injury at different time courses in rats]

Yuan XC, Song JL, Tian GH, Shi SH, Li ZG.

Zhen Ci Yan Jiu. 2009 Apr;34(2):75-82. Chinese. PMID: 19685718 [PubMed - indexed for MEDLINE]Related articles

Use of combination proteomic analysis to demonstrate molecular similarity of head and neck squamous cell carcinoma arising from different subsites.

Weinberger PM, Merkley M, Lee JR, Adam BL, Gourin CG, Podolsky RH, Haffty BG, Papadavid E, Sasaki C, Psyrri A, Dynan WS.

Arch Otolaryngol Head Neck Surg. 2009 Jul;135(7):694-703.PMID: 19620592 [PubMed - indexed for MEDLINE]Related articles

2D proteome analysis initiates new insights on the Salmonella Typhimurium LuxS protein.

Kint G, Sonck KA, Schoofs G, De Coster D, Vanderleyden J, De Keersmaecker SC.

BMC Microbiol. 2009 Sep 15;9:198.PMID: 19754952 [PubMed - indexed for MEDLINE]Related articlesFree article

Blue native DIGE as a tool for comparative analyses of protein complexes.

Heinemeyer J, Scheibe B, Schmitz UK, Braun HP.

J Proteomics. 2009 Apr 13;72(3):539-44. Epub 2009 Jan 8.PMID: 19166986 [PubMed - indexed for MEDLINE]Related articles

Introducing the CPL/MUW proteome database: interpretation of human liver and liver cancer proteome profiles by referring to isolated primary cells.

Wimmer H, Gundacker NC, Griss J, Haudek VJ, Stättner S, Mohr T, Zwickl H, Paulitschke V, Baron DM, Trittner W, Kubicek M, Bayer E, Slany A, Gerner C.

Electrophoresis. 2009 Jun;30(12):2076-89.PMID: 19582709 [PubMed - indexed for MEDLINE]Related articles

Proteomic identification of toxic volatile organic compound-responsive proteins in Arabidopsis thaliana.

Park MA, Seo JH, Park JS, Kwon M.

Plant Cell Rep. 2009 Oct;28(10):1603-14. Epub 2009 Aug 21.PMID: 19697039 [PubMed - indexed for MEDLINE]Related articles

High speed two-dimensional protein separation without gel by isoelectric focusing-asymmetrical flow field flow fractionation: application to urinary proteome.

Kim KH, Moon MH.

J Proteome Res. 2009 Sep;8(9):4272-8.PMID: 19653698 [PubMed - indexed for MEDLINE]Related articles

Validation of gel-free, label-free quantitative proteomics approaches: applications for seed allergen profiling.

Stevenson SE, Chu Y, Ozias-Akins P, Thelen JJ.

J Proteomics. 2009 Apr 13;72(3):555-66. Epub 2008 Nov 18.PMID: 19049836 [PubMed - indexed for MEDLINE]Related articles