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    Results: 1 to 20 of 251

    1.

    iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations.

    Henry CS, Zinner JF, Cohoon MP, Stevens RL.

    Genome Biol. 2009;10(6):R69. Epub 2009 Jun 25.

    PMID:
    19555510
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Accelerating the reconstruction of genome-scale metabolic networks.

    Notebaart RA, van Enckevort FH, Francke C, Siezen RJ, Teusink B.

    BMC Bioinformatics. 2006 Jun 13;7:296.

    PMID:
    16772023
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species.

    Rey MW, Ramaiya P, Nelson BA, Brody-Karpin SD, Zaretsky EJ, Tang M, Lopez de Leon A, Xiang H, Gusti V, Clausen IG, Olsen PB, Rasmussen MD, Andersen JT, Jørgensen PL, Larsen TS, Sorokin A, Bolotin A, Lapidus A, Galleron N, Ehrlich SD, Berka RM.

    Genome Biol. 2004;5(10):R77. Epub 2004 Sep 13.

    PMID:
    15461803
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Automatic policing of biochemical annotations using genomic correlations.

    Hsiao TL, Revelles O, Chen L, Sauer U, Vitkup D.

    Nat Chem Biol. 2010 Jan;6(1):34-40. Epub 2009 Nov 22.

    PMID:
    19935659
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data.

    Oh YK, Palsson BO, Park SM, Schilling CH, Mahadevan R.

    J Biol Chem. 2007 Sep 28;282(39):28791-9. Epub 2007 Jun 15.

    PMID:
    17573341
    [PubMed - indexed for MEDLINE]
    Free Article
    6.

    Optimization based automated curation of metabolic reconstructions.

    Satish Kumar V, Dasika MS, Maranas CD.

    BMC Bioinformatics. 2007 Jun 20;8:212.

    PMID:
    17584497
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    High-throughput generation, optimization and analysis of genome-scale metabolic models.

    Henry CS, DeJongh M, Best AA, Frybarger PM, Linsay B, Stevens RL.

    Nat Biotechnol. 2010 Sep;28(9):977-82. Epub 2010 Aug 29.

    PMID:
    20802497
    [PubMed - indexed for MEDLINE]
    8.

    Sequencing and functional analysis of the genome of Bacillus subtilis strain 168.

    Harwood CR, Wipat A.

    FEBS Lett. 1996 Jun 24;389(1):84-7. Review.

    PMID:
    8682212
    [PubMed - indexed for MEDLINE]
    9.

    Bacillus subtilis and its relatives: molecular biological and industrial workhorses.

    Harwood CR.

    Trends Biotechnol. 1992 Jul;10(7):247-56. Review.

    PMID:
    1368322
    [PubMed - indexed for MEDLINE]
    10.

    Knowledge of the Bacillus subtilis genome: impacts on fundamental science and biotechnology.

    Tosato V, Bruschi CV.

    Appl Microbiol Biotechnol. 2004 Mar;64(1):1-6. Epub 2003 Dec 12. Review.

    PMID:
    14673548
    [PubMed - indexed for MEDLINE]
    11.

    Systematic assignment of thermodynamic constraints in metabolic network models.

    Kümmel A, Panke S, Heinemann M.

    BMC Bioinformatics. 2006 Nov 23;7:512.

    PMID:
    17123434
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Bottom-up genome assembly using the Bacillus subtilis genome vector.

    Itaya M, Fujita K, Kuroki A, Tsuge K.

    Nat Methods. 2008 Jan;5(1):41-3. Epub 2007 Dec 9.

    PMID:
    18066072
    [PubMed - indexed for MEDLINE]
    13.

    Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis.

    Lammers CR, Flórez LA, Schmeisky AG, Roppel SF, Mäder U, Hamoen L, Stülke J.

    Microbiology. 2010 Mar;156(Pt 3):849-59. Epub 2009 Dec 3.

    PMID:
    19959575
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    Genetic control by cis-acting regulatory RNAs in Bacillus subtilis: general principles and prospects for discovery.

    Irnov, Kertsburg A, Winkler WC.

    Cold Spring Harb Symp Quant Biol. 2006;71:239-49. Review.

    PMID:
    17381303
    [PubMed - indexed for MEDLINE]
    15.

    Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production.

    Roberts SB, Gowen CM, Brooks JP, Fong SS.

    BMC Syst Biol. 2010 Mar 22;4:31.

    PMID:
    20307315
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    The complete genome of Bacillus subtilis: from sequence annotation to data management and analysis.

    Moszer I.

    FEBS Lett. 1998 Jun 23;430(1-2):28-36. Review.

    PMID:
    9678589
    [PubMed - indexed for MEDLINE]
    17.

    Toward the automated generation of genome-scale metabolic networks in the SEED.

    DeJongh M, Formsma K, Boillot P, Gould J, Rycenga M, Best A.

    BMC Bioinformatics. 2007 Apr 26;8:139.

    PMID:
    17462086
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Predicting the operon structure of Bacillus subtilis using operon length, intergene distance, and gene expression information.

    De Hoon MJ, Imoto S, Kobayashi K, Ogasawara N, Miyano S.

    Pac Symp Biocomput. 2004:276-87.

    PMID:
    14992510
    [PubMed - indexed for MEDLINE]
    Free Article
    19.

    Operon prediction using both genome-specific and general genomic information.

    Dam P, Olman V, Harris K, Su Z, Xu Y.

    Nucleic Acids Res. 2007;35(1):288-98. Epub 2006 Dec 14.

    PMID:
    17170009
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Stoichiometric growth model for riboflavin-producing Bacillus subtilis.

    Dauner M, Sauer U.

    Biotechnol Bioeng. 2001 Sep;76(2):132-43.

    PMID:
    11505383
    [PubMed - indexed for MEDLINE]

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