PubMed

A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series.

Madeira SC, Oliveira AL.

Algorithms Mol Biol. 2009 Jun 4;4:8.PMID: 19497096 [PubMed]Related articlesFree article

Identification of regulatory modules in time series gene expression data using a linear time biclustering algorithm.

Madeira SC, Teixeira MC, Sá-Correia I, Oliveira AL.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jan-Mar;7(1):153-65.PMID: 20150677 [PubMed - in process]Related articles

BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data.

Gonçalves JP, Madeira SC, Oliveira AL.

BMC Res Notes. 2009 Jul 7;2:124.PMID: 19583847 [PubMed]Related articlesFree article

Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization.

Cheng KO, Law NF, Siu WC, Liew AW.

BMC Bioinformatics. 2008 Apr 23;9:210.PMID: 18433478 [PubMed - indexed for MEDLINE]Related articlesFree article

EDISA: extracting biclusters from multiple time-series of gene expression profiles.

Supper J, Strauch M, Wanke D, Harter K, Zell A.

BMC Bioinformatics. 2007 Sep 12;8:334.PMID: 17850657 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovering biclusters in gene expression data based on high-dimensional linear geometries.

Gan X, Liew AW, Yan H.

BMC Bioinformatics. 2008 Apr 23;9:209.PMID: 18433477 [PubMed - indexed for MEDLINE]Related articlesFree article

Biclustering of microarray data with MOSPO based on crowding distance.

Liu J, Li Z, Hu X, Chen Y.

BMC Bioinformatics. 2009 Apr 29;10 Suppl 4:S9.PMID: 19426457 [PubMed - indexed for MEDLINE]Related articlesFree article

QUBIC: a qualitative biclustering algorithm for analyses of gene expression data.

Li G, Ma Q, Tang H, Paterson AH, Xu Y.

Nucleic Acids Res. 2009 Aug;37(15):e101. Epub 2009 Jun 9.PMID: 19509312 [PubMed - indexed for MEDLINE]Related articlesFree article

A new geometric biclustering algorithm based on the Hough transform for analysis of large-scale microarray data.

Zhao H, Liew AW, Xie X, Yan H.

J Theor Biol. 2008 Mar 21;251(2):264-74. Epub 2007 Dec 4.PMID: 18199458 [PubMed - indexed for MEDLINE]Related articles

A biclustering algorithm based on a Bicluster Enumeration Tree: application to DNA microarray data.

Ayadi W, Elloumi M, Hao JK.

BioData Min. 2009 Dec 16;2:9.PMID: 20015398 [PubMed - in process]Related articlesFree article

A general framework for biclustering gene expression data.

Li H, Chen X, Zhang K, Jiang T.

J Bioinform Comput Biol. 2006 Aug;4(4):911-33.PMID: 17007074 [PubMed - indexed for MEDLINE]Related articles

Finding multiple coherent biclusters in microarray data using variable string length multiobjective genetic algorithm.

Maulik U, Mukhopadhyay A, Bandyopadhyay S.

IEEE Trans Inf Technol Biomed. 2009 Nov;13(6):969-75. Epub 2009 Mar 16.PMID: 19304489 [PubMed - indexed for MEDLINE]Related articles

Discovering coherent biclusters from gene expression data using zero-suppressed binary decision diagrams.

Yoon S, Nardini C, Benini L, De Micheli G.

IEEE/ACM Trans Comput Biol Bioinform. 2005 Oct-Dec;2(4):339-54.PMID: 17044171 [PubMed - indexed for MEDLINE]Related articles

Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies.

DiMaggio PA Jr, McAllister SR, Floudas CA, Feng XJ, Rabinowitz JD, Rabitz HA.

BMC Bioinformatics. 2008 Oct 27;9:458.PMID: 18954459 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene expression data analysis using a novel approach to biclustering combining discrete and continuous data.

Christinat Y, Wachmann B, Zhang L.

IEEE/ACM Trans Comput Biol Bioinform. 2008 Oct-Dec;5(4):583-93.PMID: 18989045 [PubMed - indexed for MEDLINE]Related articles

A visual analytics approach for understanding biclustering results from microarray data.

Santamaría R, Therón R, Quintales L.

BMC Bioinformatics. 2008 May 27;9:247.PMID: 18505552 [PubMed - indexed for MEDLINE]Related articlesFree article

A novel coherence measure for discovering scaling biclusters from gene expression data.

Mukhopadhyay A, Maulik U, Bandyopadhyay S.

J Bioinform Comput Biol. 2009 Oct;7(5):853-68.PMID: 19785049 [PubMed - indexed for MEDLINE]Related articles

Extracting expression modules from perturbational gene expression compendia.

Maere S, Van Dijck P, Kuiper M.

BMC Syst Biol. 2008 Apr 10;2:33.PMID: 18402676 [PubMed - indexed for MEDLINE]Related articlesFree article

Finding distinct biclusters from background in gene expression matrices.

Wu Z, Ao J, Zhang X.

Bioinformation. 2007 Dec 30;2(5):207-15.PMID: 18305830 [PubMed - in process]Related articlesFree article

Bayesian biclustering of gene expression data.

Gu J, Liu JS.

BMC Genomics. 2008;9 Suppl 1:S4.PMID: 18366617 [PubMed - indexed for MEDLINE]Related articlesFree article