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Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes.

Makarova KS, Wolf YI, Koonin EV.

Biol Direct. 2009 Jun 3;4:19.PMID: 19493340 [PubMed - indexed for MEDLINE]Related articlesFree article

New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system.

Anantharaman V, Aravind L.

Genome Biol. 2003;4(12):R81. Epub 2003 Nov 26.PMID: 14659018 [PubMed - indexed for MEDLINE]Related articlesFree article

Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements.

Makarova KS, Wolf YI, van der Oost J, Koonin EV.

Biol Direct. 2009 Aug 25;4:29.PMID: 19706170 [PubMed - indexed for MEDLINE]Related articlesFree article

Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes.

Pandey DP, Gerdes K.

Nucleic Acids Res. 2005 Feb 17;33(3):966-76. Print 2005.PMID: 15718296 [PubMed - indexed for MEDLINE]Related articlesFree article

RASTA-Bacteria: a web-based tool for identifying toxin-antitoxin loci in prokaryotes.

Sevin EW, Barloy-Hubler F.

Genome Biol. 2007;8(8):R155.PMID: 17678530 [PubMed - indexed for MEDLINE]Related articlesFree article

The HicAB cassette, a putative novel, RNA-targeting toxin-antitoxin system in archaea and bacteria.

Makarova KS, Grishin NV, Koonin EV.

Bioinformatics. 2006 Nov 1;22(21):2581-4. Epub 2006 Aug 8.PMID: 16895922 [PubMed - indexed for MEDLINE]Related articlesFree article

Toxin-antitoxin systems homologous with relBE of Escherichia coli plasmid P307 are ubiquitous in prokaryotes.

Grønlund H, Gerdes K.

J Mol Biol. 1999 Jan 29;285(4):1401-15.PMID: 9917385 [PubMed - indexed for MEDLINE]Related articles

TasA-tasB, a new putative toxin-antitoxin (TA) system from Bacillus thuringiensis pGI1 plasmid is a widely distributed composite mazE-doc TA system.

Fico S, Mahillon J.

BMC Genomics. 2006 Oct 13;7:259.PMID: 17038198 [PubMed - indexed for MEDLINE]Related articlesFree article

Bacterial toxin-antitoxin systems: more than selfish entities?

Van Melderen L, Saavedra De Bast M.

PLoS Genet. 2009 Mar;5(3):e1000437. Epub 2009 Mar 27. Review.PMID: 19325885 [PubMed - indexed for MEDLINE]Related articlesFree article

Prokaryotic toxin-antitoxin stress response loci.

Gerdes K, Christensen SK, Løbner-Olesen A.

Nat Rev Microbiol. 2005 May;3(5):371-82. Review.PMID: 15864262 [PubMed - indexed for MEDLINE]Related articles

The chromosomal relBE2 toxin-antitoxin locus of Streptococcus pneumoniae: characterization and use of a bioluminescence resonance energy transfer assay to detect toxin-antitoxin interaction.

Nieto C, Pellicer T, Balsa D, Christensen SK, Gerdes K, Espinosa M.

Mol Microbiol. 2006 Feb;59(4):1280-96.PMID: 16430700 [PubMed - indexed for MEDLINE]Related articles

The SXT conjugative element and linear prophage N15 encode toxin-antitoxin-stabilizing systems homologous to the tad-ata module of the Paracoccus aminophilus plasmid pAMI2.

Dziewit L, Jazurek M, Drewniak L, Baj J, Bartosik D.

J Bacteriol. 2007 Mar;189(5):1983-97. Epub 2006 Dec 8.PMID: 17158670 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context.

Wolf YI, Rogozin IB, Kondrashov AS, Koonin EV.

Genome Res. 2001 Mar;11(3):356-72.PMID: 11230160 [PubMed - indexed for MEDLINE]Related articlesFree article

Escherichia coli dinJ-yafQ genes act as a toxin-antitoxin module.

Motiejūnaite R, Armalyte J, Markuckas A, Suziedeliene E.

FEMS Microbiol Lett. 2007 Mar;268(1):112-9.PMID: 17263853 [PubMed - indexed for MEDLINE]Related articles

Chromosomal toxin-antitoxin loci can diminish large-scale genome reductions in the absence of selection.

Szekeres S, Dauti M, Wilde C, Mazel D, Rowe-Magnus DA.

Mol Microbiol. 2007 Mar;63(6):1588-605.PMID: 17367382 [PubMed - indexed for MEDLINE]Related articles

Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.

Makarova KS, Aravind L, Galperin MY, Grishin NV, Tatusov RL, Wolf YI, Koonin EV.

Genome Res. 1999 Jul;9(7):608-28.PMID: 10413400 [PubMed - indexed for MEDLINE]Related articlesFree article

A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.

Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV.

Nucleic Acids Res. 2002 Jan 15;30(2):482-96.PMID: 11788711 [PubMed - indexed for MEDLINE]Related articlesFree article

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world.

Koonin EV, Wolf YI.

Nucleic Acids Res. 2008 Dec;36(21):6688-719. Epub 2008 Oct 23. Review.PMID: 18948295 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging.

Iyer LM, Makarova KS, Koonin EV, Aravind L.

Nucleic Acids Res. 2004 Oct 5;32(17):5260-79. Print 2004.PMID: 15466593 [PubMed - indexed for MEDLINE]Related articlesFree article

Temporal order of evolution of DNA replication systems inferred by comparison of cellular and viral DNA polymerases.

Koonin EV.

Biol Direct. 2006 Dec 18;1:39.PMID: 17176463 [PubMed]Related articlesFree article