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Bioprospecting metagenomes: glycosyl hydrolases for converting biomass.

Li LL, McCorkle SR, Monchy S, Taghavi S, van der Lelie D.

Biotechnol Biofuels. 2009 May 18;2:10.PMID: 19450243 [PubMed]Free PMC ArticleFree textRelated citations

Comprehensive compositional analysis of plant cell walls (Lignocellulosic biomass) part I: lignin.

Foster CE, Martin TM, Pauly M.

J Vis Exp. 2010 Mar 11;(37). pii: 1745. doi: 10.3791/1745.PMID: 20224547 [PubMed - indexed for MEDLINE]Related citations

Comprehensive compositional analysis of plant cell walls (lignocellulosic biomass) part II: carbohydrates.

Foster CE, Martin TM, Pauly M.

J Vis Exp. 2010 Mar 12;(37). pii: 1837. doi: 10.3791/1837.PMID: 20228730 [PubMed - indexed for MEDLINE]Related citations

ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes.

Kristiansson E, Hugenholtz P, Dalevi D.

Bioinformatics. 2009 Oct 15;25(20):2737-8. Epub 2009 Aug 20.PMID: 19696045 [PubMed - indexed for MEDLINE]Related citations

Metagenomic gene discovery: how far have we moved into novel sequence space?

Tuffin M, Anderson D, Heath C, Cowan DA.

Biotechnol J. 2009 Dec;4(12):1671-83. Review.PMID: 19946882 [PubMed - indexed for MEDLINE]Related citations

Biocommodity Engineering.

Lynd LR, Wyman CE, Gerngross TU.

Biotechnol Prog. 1999 Oct 1;15(5):777-793.PMID: 10514248 [PubMed - as supplied by publisher]Related citations

Achievements and new knowledge unraveled by metagenomic approaches.

Simon C, Daniel R.

Appl Microbiol Biotechnol. 2009 Nov;85(2):265-76. Epub 2009 Sep 16. Review.PMID: 19760178 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

GASdb: a large-scale and comparative exploration database of glycosyl hydrolysis systems.

Zhou F, Chen H, Xu Y.

BMC Microbiol. 2010 Mar 4;10:69.PMID: 20202206 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Identifying biologically relevant differences between metagenomic communities.

Parks DH, Beiko RG.

Bioinformatics. 2010 Mar 15;26(6):715-21. Epub 2010 Feb 3.PMID: 20130030 [PubMed - indexed for MEDLINE]Related citations

Systematic artifacts in metagenomes from complex microbial communities.

Gomez-Alvarez V, Teal TK, Schmidt TM.

ISME J. 2009 Nov;3(11):1314-7. Epub 2009 Jul 9.PMID: 19587772 [PubMed - indexed for MEDLINE]Related citations

Metagenomics for mining new genetic resources of microbial communities.

Ferrer M, Beloqui A, Timmis KN, Golyshin PN.

J Mol Microbiol Biotechnol. 2009;16(1-2):109-23. Epub 2008 Oct 29. Review.PMID: 18957866 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

Finding the needles in the metagenome haystack.

Kowalchuk GA, Speksnijder AG, Zhang K, Goodman RM, van Veen JA.

Microb Ecol. 2007 Apr;53(3):475-85. Epub 2007 Mar 8.PMID: 17345132 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases.

Brulc JM, Antonopoulos DA, Miller ME, Wilson MK, Yannarell AC, Dinsdale EA, Edwards RE, Frank ED, Emerson JB, Wacklin P, Coutinho PM, Henrissat B, Nelson KE, White BA.

Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1948-53. Epub 2009 Jan 30.PMID: 19181843 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Upflow anaerobic sludge blanket reactor--a review.

Bal AS, Dhagat NN.

Indian J Environ Health. 2001 Apr;43(2):1-82. Review.PMID: 12397675 [PubMed - indexed for MEDLINE]Related citations

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.

Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, Kubal M, Paczian T, Rodriguez A, Stevens R, Wilke A, Wilkening J, Edwards RA.

BMC Bioinformatics. 2008 Sep 19;9:386.PMID: 18803844 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Plant biomass degradation by gut microbiomes: more of the same or something new?

Morrison M, Pope PB, Denman SE, McSweeney CS.

Curr Opin Biotechnol. 2009 Jun;20(3):358-63. Epub 2009 Jun 8. Review.PMID: 19515552 [PubMed - indexed for MEDLINE]Related citations

Novel genes retrieved from environmental DNA by polymerase chain reaction: current genome-walking techniques for future metagenome applications.

Kotik M.

J Biotechnol. 2009 Oct 26;144(2):75-82. Epub 2009 Aug 25. Review.PMID: 19712711 [PubMed - indexed for MEDLINE]Related citations

Heterologous expression of glycosyl hydrolases in planta: a new departure for biofuels.

Taylor LE 2nd, Dai Z, Decker SR, Brunecky R, Adney WS, Ding SY, Himmel ME.

Trends Biotechnol. 2008 Aug;26(8):413-24. Epub 2008 Jun 23. Review.PMID: 18579242 [PubMed - indexed for MEDLINE]Related citations

Compositional Analysis of Lignocellulosic Feedstocks. 1. Review and Description of Methods.

Sluiter JB, Ruiz RO, Scarlata CJ, Sluiter AD, Templeton DW.

J Agric Food Chem. 2010 Jul 29. [Epub ahead of print]PMID: 20669951 [PubMed - as supplied by publisher]

Comparative community genomics in the Dead Sea: an increasingly extreme environment.

Bodaker I, Sharon I, Suzuki MT, Feingersch R, Shmoish M, Andreishcheva E, Sogin ML, Rosenberg M, Maguire ME, Belkin S, Oren A, Béjà O.

ISME J. 2010 Mar;4(3):399-407. Epub 2009 Dec 24.PMID: 20033072 [PubMed - indexed for MEDLINE]Related citations