PubMed

Classification-based comparison of pre-processing methods for interpretation of mass spectrometry generated clinical datasets.

Wegdam W, Moerland PD, Buist MR, Ver Loren van Themaat E, Bleijlevens B, Hoefsloot HC, de Koster CG, Aerts JM.

Proteome Sci. 2009 May 14;7:19.PMID: 19442271 [PubMed]Related articlesFree article

Comparison of algorithms for pre-processing of SELDI-TOF mass spectrometry data.

Cruz-Marcelo A, Guerra R, Vannucci M, Li Y, Lau CC, Man TK.

Bioinformatics. 2008 Oct 1;24(19):2129-36. Epub 2008 Aug 11.PMID: 18694894 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison of software tools to improve the detection of carcinogen induced changes in the rat liver proteome by analyzing SELDI-TOF-MS spectra.

Beyer S, Walter Y, Hellmann J, Kramer PJ, Kopp-Schneider A, Kroeger M, Ittrich C.

J Proteome Res. 2006 Feb;5(2):254-61.PMID: 16457590 [PubMed - indexed for MEDLINE]Related articles

Laboratory methods to improve SELDI peak detection and quantitation.

Rollin D, Whistler T, Vernon SD.

Proteome Sci. 2007 Jul 2;5:9.PMID: 17605798 [PubMed]Related articlesFree article

Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry data.

Meuleman W, Engwegen JY, Gast MC, Beijnen JH, Reinders MJ, Wessels LF.

BMC Bioinformatics. 2008 Feb 7;9:88.PMID: 18257918 [PubMed - indexed for MEDLINE]Related articlesFree article

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data.

Jaitly N, Mayampurath A, Littlefield K, Adkins JN, Anderson GA, Smith RD.

BMC Bioinformatics. 2009 Mar 17;10:87.PMID: 19292916 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison of Computational Algorithms for the Classification of Liver Cancer using SELDI Mass Spectrometry: A Case Study.

Shen C, Breen TE, Dobrolecki LE, Schmidt CM, Sledge GW, Miller KD, Hickey RJ.

Cancer Inform. 2007 Dec 11;3:329-39.PMID: 19455252 [PubMed - in process]Related articlesFree article

Ovarian Cancer Classification based on Mass Spectrometry Analysis of Sera.

Wu B, Abbott T, Fishman D, McMurray W, Mor G, Stone K, Ward D, Williams K, Zhao H.

Cancer Inform. 2007 Feb 17;2:123-32.PMID: 19458764 [PubMed - in process]Related articlesFree article

Assessing effects of pre-processing mass spectrometry data on classification performance.

Ozcift A, Gulten A.

Eur J Mass Spectrom (Chichester, Eng). 2008;14(5):267-73.PMID: 19023144 [PubMed - indexed for MEDLINE]Related articles

Assessing the Statistical Significance of the Achieved Classification Error of Classifiers Constructed using Serum Peptide Profiles, and a Prescription for Random Sampling Repeated Studies for Massive High-Throughput Genomic and Proteomic Studies.

Lyons-Weiler J, Pelikan R, Zeh HJ, Whitcomb DC, Malehorn DE, Bigbee WL, Hauskrecht M.

Cancer Inform. 2005;1:53-77.PMID: 19325865 [PubMed - in process]Related articlesFree article

Assessing the Statistical Significance of the Achieved Classification Error of Classifiers Constructed using Serum Peptide Profiles, and a Prescription for Random Sampling Repeated Studies for Massive High-Throughput Genomic and Proteomic Studies.

Lyons-Weiler J, Pelikan R, Zeh HJ, Whitcomb DC, Malehorn DE, Bigbee WL, Hauskrecht M.

Cancer Inform. 2005;1:53-77.PMID: 19305632 [PubMed - in process]Related articlesFree article

The Need for Review and Understanding of SELDI/MALDI Mass Spectroscopy Data Prior to Analysis.

Grizzle WE, Semmes OJ, Bigbee W, Zhu L, Malik G, Oelschlager DK, Manne B, Manne U.

Cancer Inform. 2005;1:86-97.PMID: 19325867 [PubMed - in process]Related articlesFree article

The Need for Review and Understanding of SELDI/MALDI Mass Spectroscopy Data Prior to Analysis.

Grizzle WE, Semmes OJ, Bigbee W, Zhu L, Malik G, Oelschlager DK, Manne B, Manne U.

Cancer Inform. 2005;1:86-97.PMID: 19305634 [PubMed - in process]Related articlesFree article

Understanding the characteristics of mass spectrometry data through the use of simulation.

Coombes KR, Koomen JM, Baggerly KA, Morris JS, Kobayashi R.

Cancer Inform. 2005;1:41-52.PMID: 19325864 [PubMed - in process]Related articlesFree article

Understanding the characteristics of mass spectrometry data through the use of simulation.

Coombes KR, Koomen JM, Baggerly KA, Morris JS, Kobayashi R.

Cancer Inform. 2005;1:41-52.PMID: 19305631 [PubMed - in process]Related articlesFree article

Prognosis of the short-term efficacy of thymectomy for myasthenia gravis with serum protein profiles.

Wu GY, Pang JZ, Cheng C, Lu JJ, Ma J, Gu Y, Zhong FT, Luo HH.

Chin Med J (Engl). 2009 Jul 20;122(14):1625-30.PMID: 19719962 [PubMed - indexed for MEDLINE]Related articlesFree article

MS-Express: data-extracting and -processing software for high-throughput experimentation with mass spectrometry.

Weiss PA, Thome C, Maier WF.

J Comb Chem. 2004 Jul-Aug;6(4):520-9.PMID: 15244413 [PubMed - indexed for MEDLINE]Related articles

Application of the random forest classification method to peaks detected from mass spectrometric proteomic profiles of cancer patients and controls.

Barrett JH, Cairns DA.

Stat Appl Genet Mol Biol. 2008;7(2):Article4. Epub 2008 Feb 8.PMID: 18312218 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison of feature selection and classification for MALDI-MS data.

Liu Q, Sung AH, Qiao M, Chen Z, Yang JY, Yang MQ, Huang X, Deng Y.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S3.PMID: 19594880 [PubMed - indexed for MEDLINE]Related articlesFree article

[Detection of differentially expressed proteins in the semen of oligospermia patients by SELDI-TOF-MS technology]

Liu CB, Liang Y, Pan CQ, Zhang J.

Zhonghua Nan Ke Xue. 2009 Mar;15(3):232-6. Chinese. PMID: 19452695 [PubMed - indexed for MEDLINE]Related articles