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    Results: 1 to 20 of 130

    1.

    In silico miRNA prediction in metazoan genomes: balancing between sensitivity and specificity.

    van der Burgt A, Fiers MW, Nap JP, van Ham RC.

    BMC Genomics. 2009 Apr 30;10:204.PMID: 19405940 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    MiRFinder: an improved approach and software implementation for genome-wide fast microRNA precursor scans.

    Huang TH, Fan B, Rothschild MF, Hu ZL, Li K, Zhao SH.

    BMC Bioinformatics. 2007 Sep 17;8:341.PMID: 17868480 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine.

    Xue C, Li F, He T, Liu GP, Li Y, Zhang X.

    BMC Bioinformatics. 2005 Dec 29;6:310.PMID: 16381612 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Mammalian microRNA prediction through a support vector machine model of sequence and structure.

    Sheng Y, Engström PG, Lenhard B.

    PLoS One. 2007 Sep 26;2(9):e946.PMID: 17895987 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Identifications of conserved 7-mers in 3'-UTRs and microRNAs in Drosophila.

    Gu J, Fu H, Zhang X, Li Y.

    BMC Bioinformatics. 2007 Nov 8;8:432.PMID: 17996040 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    MiRTif: a support vector machine-based microRNA target interaction filter.

    Yang Y, Wang YP, Li KB.

    BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S4.PMID: 19091027 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Ab initio identification of human microRNAs based on structure motifs.

    Brameier M, Wiuf C.

    BMC Bioinformatics. 2007 Dec 18;8:478.PMID: 18088431 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Identification of clustered microRNAs using an ab initio prediction method.

    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M.

    BMC Bioinformatics. 2005 Nov 7;6:267.PMID: 16274478 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification.

    Ohler U, Yekta S, Lim LP, Bartel DP, Burge CB.

    RNA. 2004 Sep;10(9):1309-22.PMID: 15317971 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    miROrtho: computational survey of microRNA genes.

    Gerlach D, Kriventseva EV, Rahman N, Vejnar CE, Zdobnov EM.

    Nucleic Acids Res. 2009 Jan;37(Database issue):D111-7. Epub 2008 Oct 15.PMID: 18927110 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets.

    Wang XJ, Reyes JL, Chua NH, Gaasterland T.

    Genome Biol. 2004;5(9):R65. Epub 2004 Aug 31.PMID: 15345049 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Bioinformatic discovery of microRNA precursors from human ESTs and introns.

    Li SC, Pan CY, Lin WC.

    BMC Genomics. 2006 Jul 3;7:164.PMID: 16813663 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures.

    Ng KL, Mishra SK.

    Bioinformatics. 2007 Jun 1;23(11):1321-30. Epub 2007 Jan 31.PMID: 17267435 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Computational identification of Drosophila microRNA genes.

    Lai EC, Tomancak P, Williams RW, Rubin GM.

    Genome Biol. 2003;4(7):R42. Epub 2003 Jun 30.PMID: 12844358 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    microPred: effective classification of pre-miRNAs for human miRNA gene prediction.

    Batuwita R, Palade V.

    Bioinformatics. 2009 Apr 15;25(8):989-95. Epub 2009 Feb 20.PMID: 19233894 [PubMed - indexed for MEDLINE]Related articles

    16.

    Computational analysis of microRNA targets in Caenorhabditis elegans.

    Watanabe Y, Yachie N, Numata K, Saito R, Kanai A, Tomita M.

    Gene. 2006 Jan 3;365:2-10. Epub 2005 Dec 13.PMID: 16356665 [PubMed - indexed for MEDLINE]Related articles

    17.

    HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models.

    Kadri S, Hinman V, Benos PV.

    BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S35.PMID: 19208136 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Computational identification of novel microRNAs and targets in Brassica napus.

    Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM.

    FEBS Lett. 2007 Apr 3;581(7):1464-74. Epub 2007 Mar 8.PMID: 17367786 [PubMed - indexed for MEDLINE]Related articles

    19.

    Reliable prediction of Drosha processing sites improves microRNA gene prediction.

    Helvik SA, Snøve O Jr, Saetrom P.

    Bioinformatics. 2007 Jan 15;23(2):142-9. Epub 2006 Nov 14.PMID: 17105718 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    MicroRNA targets in Drosophila.

    Enright AJ, John B, Gaul U, Tuschl T, Sander C, Marks DS.

    Genome Biol. 2003;5(1):R1. Epub 2003 Dec 12.PMID: 14709173 [PubMed - indexed for MEDLINE]Related articlesFree article

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