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    Results: 1 to 20 of 160

    1.

    Gene set internal coherence in the context of functional profiling.

    Montaner D, Minguez P, Al-Shahrour F, Dopazo J.

    BMC Genomics. 2009 Apr 27;10:197.PMID: 19397819 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Towards precise classification of cancers based on robust gene functional expression profiles.

    Guo Z, Zhang T, Li X, Wang Q, Xu J, Yu H, Zhu J, Wang H, Wang C, Topol EJ, Wang Q, Rao S.

    BMC Bioinformatics. 2005 Mar 17;6:58.PMID: 15774002 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes.

    Datta S, Datta S.

    BMC Bioinformatics. 2006 Aug 31;7:397.PMID: 16945146 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Sex genes for genomic analysis in human brain: internal controls for comparison of probe level data extraction.

    Galfalvy HC, Erraji-Benchekroun L, Smyrniotopoulos P, Pavlidis P, Ellis SP, Mann JJ, Sibille E, Arango V.

    BMC Bioinformatics. 2003 Sep 8;4:37. Epub 2003 Sep 8.PMID: 12962547 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    CLEAN: CLustering Enrichment ANalysis.

    Freudenberg JM, Joshi VK, Hu Z, Medvedovic M.

    BMC Bioinformatics. 2009 Jul 29;10:234.PMID: 19640299 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    From co-expression to co-regulation: how many microarray experiments do we need?

    Yeung KY, Medvedovic M, Bumgarner RE.

    Genome Biol. 2004;5(7):R48. Epub 2004 Jun 28.PMID: 15239833 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.

    Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z.

    BMC Bioinformatics. 2009 Feb 3;10:48.PMID: 19192299 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Mining gene expression data by interpreting principal components.

    Roden JC, King BW, Trout D, Mortazavi A, Wold BJ, Hart CE.

    BMC Bioinformatics. 2006 Apr 7;7:194.PMID: 16600052 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    MILANO--custom annotation of microarray results using automatic literature searches.

    Rubinstein R, Simon I.

    BMC Bioinformatics. 2005 Jan 20;6:12.PMID: 15661078 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Gene set-based module discovery in the breast cancer transcriptome.

    Niida A, Smith AD, Imoto S, Aburatani H, Zhang MQ, Akiyama T.

    BMC Bioinformatics. 2009 Feb 26;10:71.PMID: 19243633 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments.

    Reimand J, Kull M, Peterson H, Hansen J, Vilo J.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W193-200. Epub 2007 May 3.PMID: 17478515 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Gene expression module discovery using gibbs sampling.

    Wu CJ, Fu Y, Murali TM, Kasif S.

    Genome Inform. 2004;15(1):239-48.PMID: 15712126 [PubMed - indexed for MEDLINE]Related articles

    13.

    GO-2D: identifying 2-dimensional cellular-localized functional modules in Gene Ontology.

    Zhu J, Wang J, Guo Z, Zhang M, Yang D, Li Y, Wang D, Xiao G.

    BMC Genomics. 2007 Jan 24;8:30.PMID: 17250772 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Improved scoring of functional groups from gene expression data by decorrelating GO graph structure.

    Alexa A, Rahnenführer J, Lengauer T.

    Bioinformatics. 2006 Jul 1;22(13):1600-7. Epub 2006 Apr 10.PMID: 16606683 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists.

    Huang da W, Sherman BT, Tan Q, Collins JR, Alvord WG, Roayaei J, Stephens R, Baseler MW, Lane HC, Lempicki RA.

    Genome Biol. 2007;8(9):R183.PMID: 17784955 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Combining Pareto-optimal clusters using supervised learning for identifying co-expressed genes.

    Maulik U, Mukhopadhyay A, Bandyopadhyay S.

    BMC Bioinformatics. 2009 Jan 20;10:27.PMID: 19154590 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    A computational approach to measuring coherence of gene expression in pathways.

    Yang HH, Hu Y, Buetow KH, Lee MP.

    Genomics. 2004 Jul;84(1):211-7.PMID: 15203219 [PubMed - indexed for MEDLINE]Related articles

    18.

    Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes.

    Chou JW, Zhou T, Kaufmann WK, Paules RS, Bushel PR.

    BMC Bioinformatics. 2007 Nov 2;8:427.PMID: 17980031 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments.

    Liu H, Tarima S, Borders AS, Getchell TV, Getchell ML, Stromberg AJ.

    BMC Bioinformatics. 2005 Apr 25;6:106.PMID: 15850479 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.

    Al-Shahrour F, Minguez P, Tárraga J, Medina I, Alloza E, Montaner D, Dopazo J.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W91-6. Epub 2007 May 3.PMID: 17478504 [PubMed - indexed for MEDLINE]Related articlesFree article

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