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    Results: 1 to 20 of 159

    1.

    LC-MS/MS-based proteome profiling in Daphnia pulex and Daphnia longicephala: the Daphnia pulex genome database as a key for high throughput proteomics in Daphnia.

    Fröhlich T, Arnold GJ, Fritsch R, Mayr T, Laforsch C.

    BMC Genomics. 2009 Apr 21;10:171.PMID: 19383153 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Genome annotation of Anopheles gambiae using mass spectrometry-derived data.

    Kalume DE, Peri S, Reddy R, Zhong J, Okulate M, Kumar N, Pandey A.

    BMC Genomics. 2005 Sep 19;6:128.PMID: 16171517 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites.

    Hummel J, Niemann M, Wienkoop S, Schulze W, Steinhauser D, Selbig J, Walther D, Weckwerth W.

    BMC Bioinformatics. 2007 Jun 23;8:216.PMID: 17587460 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry.

    Desiere F, Deutsch EW, Nesvizhskii AI, Mallick P, King NL, Eng JK, Aderem A, Boyle R, Brunner E, Donohoe S, Fausto N, Hafen E, Hood L, Katze MG, Kennedy KA, Kregenow F, Lee H, Lin B, Martin D, Ranish JA, Rawlings DJ, Samelson LE, Shiio Y, Watts JD, Wollscheid B, Wright ME, Yan W, Yang L, Yi EC, Zhang H, Aebersold R.

    Genome Biol. 2005;6(1):R9. Epub 2004 Dec 10.PMID: 15642101 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Improving gene annotation using peptide mass spectrometry.

    Tanner S, Shen Z, Ng J, Florea L, Guigó R, Briggs SP, Bafna V.

    Genome Res. 2007 Feb;17(2):231-9. Epub 2006 Dec 22.PMID: 17189379 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring.

    Dworzanski JP, Snyder AP, Chen R, Zhang H, Wishart D, Li L.

    Anal Chem. 2004 Apr 15;76(8):2355-66.PMID: 15080748 [PubMed - indexed for MEDLINE]Related articles

    7.

    The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results.

    Braisted JC, Kuntumalla S, Vogel C, Marcotte EM, Rodrigues AR, Wang R, Huang ST, Ferlanti ES, Saeed AI, Fleischmann RD, Peterson SN, Pieper R.

    BMC Bioinformatics. 2008 Dec 9;9:529.PMID: 19068132 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides.

    Heller M, Ye M, Michel PE, Morier P, Stalder D, Jünger MA, Aebersold R, Reymond F, Rossier JS.

    J Proteome Res. 2005 Nov-Dec;4(6):2273-82.PMID: 16335976 [PubMed - indexed for MEDLINE]Related articles

    9.

    The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation.

    Loevenich SN, Brunner E, King NL, Deutsch EW, Stein SE; FlyBase Consortium, Aebersold R, Hafen E.

    BMC Bioinformatics. 2009 Feb 11;10:59.PMID: 19210778 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Comparison of two tandem mass spectrometry-based methods for analyzing the proteome of healthy human lens fibers.

    Zhang C, Liu P, Wang N, Li Y, Wang L.

    Mol Vis. 2007 Oct 3;13:1873-7.PMID: 17960125 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics.

    Fermin D, Allen BB, Blackwell TW, Menon R, Adamski M, Xu Y, Ulintz P, Omenn GS, States DJ.

    Genome Biol. 2006;7(4):R35. Epub 2006 Apr 28.PMID: 16646984 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    High-throughput analysis of rat liver plasma membrane proteome by a nonelectrophoretic in-gel tryptic digestion coupled with mass spectrometry identification.

    Cao R, He Q, Zhou J, He Q, Liu Z, Wang X, Chen P, Xie J, Liang S.

    J Proteome Res. 2008 Feb;7(2):535-45. Epub 2008 Jan 1.PMID: 18166008 [PubMed - indexed for MEDLINE]Related articles

    13.

    Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger.

    Wright JC, Sugden D, Francis-McIntyre S, Riba-Garcia I, Gaskell SJ, Grigoriev IV, Baker SE, Beynon RJ, Hubbard SJ.

    BMC Genomics. 2009 Feb 4;10:61.PMID: 19193216 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Characterization of strategies for obtaining confident identifications in bottom-up proteomics measurements using hybrid FTMS instruments.

    Tolmachev AV, Monroe ME, Purvine SO, Moore RJ, Jaitly N, Adkins JN, Anderson GA, Smith RD.

    Anal Chem. 2008 Nov 15;80(22):8514-25. Epub 2008 Oct 15.PMID: 18855412 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Generation of a predicted protein database from EST data and application to iTRAQ analyses in grape (Vitis vinifera cv. Cabernet Sauvignon) berries at ripening initiation.

    Lücker J, Laszczak M, Smith D, Lund ST.

    BMC Genomics. 2009 Jan 26;10:50.PMID: 19171055 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    An SVM scorer for more sensitive and reliable peptide identification via tandem mass spectrometry.

    Wang H, Fu Y, Sun R, He S, Zeng R, Gao W.

    Pac Symp Biocomput. 2006:303-14.PMID: 17094248 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Whole genome searching with shotgun proteomic data: applications for genome annotation.

    Sevinsky JR, Cargile BJ, Bunger MK, Meng F, Yates NA, Hendrickson RC, Stephenson JL Jr.

    J Proteome Res. 2008 Jan;7(1):80-8. Epub 2007 Dec 7.PMID: 18062665 [PubMed - indexed for MEDLINE]Related articles

    18.

    Proteome analysis of Edwardsiella ictaluri.

    Dumpala PR, Lawrence ML, Karsi A.

    Proteomics. 2009 Mar;9(5):1353-63.PMID: 19253294 [PubMed - indexed for MEDLINE]Related articles

    19.

    Reference map for liquid chromatography-mass spectrometry-based quantitative proteomics.

    Kim YJ, Feild B, Fitzhugh W, Heidbrink JL, Duff JW, Heil J, Ruben SM, He T.

    Anal Biochem. 2009 Oct 15;393(2):155-62. Epub 2009 Jun 16.PMID: 19538932 [PubMed - indexed for MEDLINE]Related articles

    20.

    Protein identification from product ion spectra of peptides validated by correlation between measured and predicted elution times in liquid chromatography/mass spectrometry.

    Kawakami T, Tateishi K, Yamano Y, Ishikawa T, Kuroki K, Nishimura T.

    Proteomics. 2005 Mar;5(4):856-64.PMID: 15668996 [PubMed - indexed for MEDLINE]Related articles

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