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    Results: 1 to 20 of 105

    1.

    Promoter analysis: gene regulatory motif identification with A-GLAM.

    Mariño-Ramírez L, Tharakaraman K, Spouge JL, Landsman D.

    Methods Mol Biol. 2009;537:263-76.PMID: 19378149 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Identification of cis-regulatory elements in gene co-expression networks using A-GLAM.

    Mariño-Ramírez L, Tharakaraman K, Bodenreider O, Spouge J, Landsman D.

    Methods Mol Biol. 2009;541:1-22. Review.PMID: 19381547 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    CompMoby: comparative MobyDick for detection of cis-regulatory motifs.

    Chaivorapol C, Melton C, Wei G, Yeh RF, Ramalho-Santos M, Blelloch R, Li H.

    BMC Bioinformatics. 2008 Oct 27;9:455.PMID: 18950538 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Alignments anchored on genomic landmarks can aid in the identification of regulatory elements.

    Tharakaraman K, Mariño-Ramírez L, Sheetlin S, Landsman D, Spouge JL.

    Bioinformatics. 2005 Jun;21 Suppl 1:i440-8.PMID: 15961489 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Computational identification of transcriptional regulatory elements in DNA sequence.

    GuhaThakurta D.

    Nucleic Acids Res. 2006 Jul 19;34(12):3585-98. Print 2006. Review.PMID: 16855295 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Ab initio identification of putative human transcription factor binding sites by comparative genomics.

    Corà D, Herrmann C, Dieterich C, Di Cunto F, Provero P, Caselle M.

    BMC Bioinformatics. 2005 May 2;6:110.PMID: 15865625 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Bioinformatic identification of novel putative photoreceptor specific cis-elements.

    Danko CG, McIlvain VA, Qin M, Knox BE, Pertsov AM.

    BMC Bioinformatics. 2007 Oct 22;8:407.PMID: 17953763 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    A survey of DNA motif finding algorithms.

    Das MK, Dai HK.

    BMC Bioinformatics. 2007 Nov 1;8 Suppl 7:S21. Review.PMID: 18047721 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Generic eukaryotic core promoter prediction using structural features of DNA.

    Abeel T, Saeys Y, Bonnet E, Rouzé P, Van de Peer Y.

    Genome Res. 2008 Feb;18(2):310-23. Epub 2007 Dec 20.PMID: 18096745 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.

    Kim SY, Kim Y.

    BMC Bioinformatics. 2006 Jul 4;7:330.PMID: 16817975 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    An improved Gibbs sampling method for motif discovery via sequence weighting.

    Chen X, Jiang T.

    Comput Syst Bioinformatics Conf. 2006:239-47.PMID: 17369642 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Seeder: discriminative seeding DNA motif discovery.

    Fauteux F, Blanchette M, Strömvik MV.

    Bioinformatics. 2008 Oct 15;24(20):2303-7. Epub 2008 Aug 21.PMID: 18718942 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Comparative genomic analysis of transcription regulation elements involved in human map kinase G-protein coupling pathway.

    Polouliakh N, Natsume T, Harada H, Fujibuchi W, Horton P.

    J Bioinform Comput Biol. 2006 Apr;4(2):469-82.PMID: 16819796 [PubMed - indexed for MEDLINE]Related articles

    14.

    Boosting with stumps for predicting transcription start sites.

    Zhao X, Xuan Z, Zhang MQ.

    Genome Biol. 2007;8(2):R17.PMID: 17274821 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Identifying the conserved network of cis-regulatory sites of a eukaryotic genome.

    Wang T, Stormo GD.

    Proc Natl Acad Sci U S A. 2005 Nov 29;102(48):17400-5. Epub 2005 Nov 21.PMID: 16301543 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Cluster analysis and promoter modelling as bioinformatics tools for the identification of target genes from expression array data.

    Werner T.

    Pharmacogenomics. 2001 Feb;2(1):25-36. Review.PMID: 11258194 [PubMed - indexed for MEDLINE]Related articles

    17.

    Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks.

    Reiss DJ, Baliga NS, Bonneau R.

    BMC Bioinformatics. 2006 Jun 2;7:280.PMID: 16749936 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.

    Marinescu VD, Kohane IS, Riva A.

    BMC Bioinformatics. 2005 Mar 30;6:79.PMID: 15799782 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Development of a novel data mining tool to find cis-elements in rice gene promoter regions.

    Doi K, Hosaka A, Nagata T, Satoh K, Suzuki K, Mauleon R, Mendoza MJ, Bruskiewich R, Kikuchi S.

    BMC Plant Biol. 2008 Feb 27;8:20.PMID: 18302796 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Computational approaches to identify promoters and cis-regulatory elements in plant genomes.

    Rombauts S, Florquin K, Lescot M, Marchal K, Rouzé P, van de Peer Y.

    Plant Physiol. 2003 Jul;132(3):1162-76. Review.PMID: 12857799 [PubMed - indexed for MEDLINE]Related articlesFree article

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