PubMed

Severin J, Waterhouse AM, Kawaji H, Lassmann T, van Nimwegen E, Balwierz PJ, de Hoon MJ, Hume DA, Carninci P, Hayashizaki Y, Suzuki H, Daub CO, Forrest AR.

Genome Biol. 2009;10(4):R39. Epub 2009 Apr 19.

Kawaji H, Severin J, Lizio M, Forrest AR, van Nimwegen E, Rehli M, Schroder K, Irvine K, Suzuki H, Carninci P, Hayashizaki Y, Daub CO.

Nucleic Acids Res. 2011 Jan;39(Database issue):D856-60. Epub 2010 Nov 12.

Liu CC, Lin CC, Chen WS, Chen HY, Chang PC, Chen JJ, Yang PC.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W571-7.

Elkon R, Linhart C, Sharan R, Shamir R, Shiloh Y.

Genome Res. 2003 May;13(5):773-80.

Robert C, Lu X, Law A, Freeman TC, Hume DA.

Immunobiology. 2011 Nov;216(11):1203-11. Epub 2011 Jul 23.

Baumbach J, Wittkop T, Kleindt CK, Tauch A.

Nat Protoc. 2009;4(6):992-1005.

Chang LW, Payton JE, Yuan W, Ley TJ, Nagarajan R, Stormo GD.

Genome Biol. 2008;9(2):R38. Epub 2008 Feb 21.

Gama-Castro S, Jiménez-Jacinto V, Peralta-Gil M, Santos-Zavaleta A, Peñaloza-Spinola MI, Contreras-Moreira B, Segura-Salazar J, Muñiz-Rascado L, Martínez-Flores I, Salgado H, Bonavides-Martínez C, Abreu-Goodger C, Rodríguez-Penagos C, Miranda-Ríos J, Morett E, Merino E, Huerta AM, Treviño-Quintanilla L, Collado-Vides J.

Nucleic Acids Res. 2008 Jan;36(Database issue):D120-4. Epub 2007 Dec 23.

Kawaji H, Severin J, Lizio M, Waterhouse A, Katayama S, Irvine KM, Hume DA, Forrest AR, Suzuki H, Carninci P, Hayashizaki Y, Daub CO.

Genome Biol. 2009;10(4):R40. Epub 2009 Apr 19.

Chang AN.

Methods Mol Biol. 2009;563:141-56.

Baumbach J, Apeltsin L.

BMC Genomics. 2008 Apr 21;9:184.

Le Béchec A, Portales-Casamar E, Vetter G, Moes M, Zindy PJ, Saumet A, Arenillas D, Theillet C, Wasserman WW, Lecellier CH, Friederich E.

BMC Bioinformatics. 2011 Mar 4;12:67.

Clement K, Gustafson N, Berbert A, Carroll H, Merris C, Olsen A, Clement M, Snell Q, Allen J, Roper RJ.

Bioinformatics. 2010 Feb 1;26(3):423-5. Epub 2009 Dec 4.

Freeman TC, Goldovsky L, Brosch M, van Dongen S, Mazière P, Grocock RJ, Freilich S, Thornton J, Enright AJ.

PLoS Comput Biol. 2007 Oct;3(10):2032-42.

Pohar TT, Sun H, Davuluri RV.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D86-90.

Li Y, Zhu Y, Bai X, Cai H, Ji W, Guo D.

Genomics. 2009 Nov;94(5):349-54. Epub 2009 Aug 25.

Chen L, Zheng S.

Genome Biol. 2009;10(1):R3. Epub 2009 Jan 9.

FANTOM Consortium, Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, Irvine KM, Lassmann T, Ravasi T, Hasegawa Y, de Hoon MJ, Katayama S, Schroder K, Carninci P, Tomaru Y, Kanamori-Katayama M, Kubosaki A, Akalin A, Ando Y, Arner E, Asada M, Asahara H, Bailey T, Bajic VB, Bauer D, Beckhouse AG, Bertin N, Björkegren J, Brombacher F, Bulger E, Chalk AM, Chiba J, Cloonan N, Dawe A, Dostie J, Engström PG, Essack M, Faulkner GJ, Fink JL, Fredman D, Fujimori K, Furuno M, Gojobori T, Gough J, Grimmond SM, Gustafsson M, Hashimoto M, Hashimoto T, Hatakeyama M, Heinzel S, Hide W, Hofmann O, Hörnquist M, Huminiecki L, Ikeo K, Imamoto N, Inoue S, Inoue Y, Ishihara R, Iwayanagi T, Jacobsen A, Kaur M, Kawaji H, Kerr MC, Kimura R, Kimura S, Kimura Y, Kitano H, Koga H, Kojima T, Kondo S, Konno T, Krogh A, Kruger A, Kumar A, Lenhard B, Lennartsson A, Lindow M, Lizio M, Macpherson C, Maeda N, Maher CA, Maqungo M, Mar J, Matigian NA, Matsuda H, Mattick JS, Meier S, Miyamoto S, Miyamoto-Sato E, Nakabayashi K, Nakachi Y, Nakano M, Nygaard S, Okayama T, Okazaki Y, Okuda-Yabukami H, Orlando V, Otomo J, Pachkov M, Petrovsky N, Plessy C, Quackenbush J, Radovanovic A, Rehli M, Saito R, Sandelin A, Schmeier S, Schönbach C, Schwartz AS, Semple CA, Sera M, Severin J, Shirahige K, Simons C, St Laurent G, Suzuki M, Suzuki T, Sweet MJ, Taft RJ, Takeda S, Takenaka Y, Tan K, Taylor MS, Teasdale RD, Tegnér J, Teichmann S, Valen E, Wahlestedt C, Waki K, Waterhouse A, Wells CA, Winther O, Wu L, Yamaguchi K, Yanagawa H, Yasuda J, Zavolan M, Hume DA; Riken Omics Science Center, Arakawa T, Fukuda S, Imamura K, Kai C, Kaiho A, Kawashima T, Kawazu C, Kitazume Y, Kojima M, Miura H, Murakami K, Murata M, Ninomiya N, Nishiyori H, Noma S, Ogawa C, Sano T, Simon C, Tagami M, Takahashi Y, Kawai J, Hayashizaki Y.

Nat Genet. 2009 May;41(5):553-62. Epub 2009 Apr 19.

Creighton CJ, Nagaraja AK, Hanash SM, Matzuk MM, Gunaratne PH.

RNA. 2008 Nov;14(11):2290-6. Epub 2008 Sep 23.

Ghedira K, Hornischer K, Konovalova T, Jenhani AZ, Benkahla A, Kel A.

Infect Genet Evol. 2011 Jun;11(4):769-77. Epub 2010 Nov 18.