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    Results: 1 to 20 of 952

    1.

    Evolutionary rates and centrality in the yeast gene regulatory network.

    Jovelin R, Phillips PC.

    Genome Biol. 2009;10(4):R35. Epub 2009 Apr 9.

    PMID:
    19358738
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Transcriptional regulatory networks in Saccharomyces cerevisiae.

    Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.

    Science. 2002 Oct 25;298(5594):799-804.

    PMID:
    12399584
    [PubMed - indexed for MEDLINE]
    3.

    Topological basis of signal integration in the transcriptional-regulatory network of the yeast, Saccharomyces cerevisiae.

    Farkas IJ, Wu C, Chennubhotla C, Bahar I, Oltvai ZN.

    BMC Bioinformatics. 2006 Oct 28;7:478.

    PMID:
    17069658
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast.

    Balaji S, Babu MM, Iyer LM, Luscombe NM, Aravind L.

    J Mol Biol. 2006 Jun 30;360(1):213-27. Epub 2006 May 3.

    PMID:
    16762362
    [PubMed - indexed for MEDLINE]
    5.

    Localized network centrality and essentiality in the yeast-protein interaction network.

    Park K, Kim D.

    Proteomics. 2009 Nov;9(22):5143-54.

    PMID:
    19771559
    [PubMed - indexed for MEDLINE]
    6.

    Protein evolution in yeast transcription factor subnetworks.

    Wang Y, Franzosa EA, Zhang XS, Xia Y.

    Nucleic Acids Res. 2010 Oct;38(18):5959-69. Epub 2010 May 13.

    PMID:
    20466810
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Position specific variation in the rate of evolution in transcription factor binding sites.

    Moses AM, Chiang DY, Kellis M, Lander ES, Eisen MB.

    BMC Evol Biol. 2003 Aug 28;3:19. Epub 2003 Aug 28.

    PMID:
    12946282
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression.

    Boorsma A, Lu XJ, Zakrzewska A, Klis FM, Bussemaker HJ.

    PLoS One. 2008 Sep 3;3(9):e3112.

    PMID:
    18769540
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Information flow analysis of interactome networks.

    Missiuro PV, Liu K, Zou L, Ross BC, Zhao G, Liu JS, Ge H.

    PLoS Comput Biol. 2009 Apr;5(4):e1000350. Epub 2009 Apr 10.

    PMID:
    19503817
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Computational discovery of gene modules and regulatory networks.

    Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DK.

    Nat Biotechnol. 2003 Nov;21(11):1337-42. Epub 2003 Oct 12.

    PMID:
    14555958
    [PubMed - indexed for MEDLINE]
    Free Article
    11.

    Divergence of transcription factor binding sites across related yeast species.

    Borneman AR, Gianoulis TA, Zhang ZD, Yu H, Rozowsky J, Seringhaus MR, Wang LY, Gerstein M, Snyder M.

    Science. 2007 Aug 10;317(5839):815-9.

    PMID:
    17690298
    [PubMed - indexed for MEDLINE]
    13.

    Network hubs buffer environmental variation in Saccharomyces cerevisiae.

    Levy SF, Siegal ML.

    PLoS Biol. 2008 Nov 4;6(11):e264.

    PMID:
    18986213
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Influence of metabolic network structure and function on enzyme evolution.

    Vitkup D, Kharchenko P, Wagner A.

    Genome Biol. 2006;7(5):R39. Epub 2006 May 9.

    PMID:
    16684370
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata.

    Lelandais G, Tanty V, Geneix C, Etchebest C, Jacq C, Devaux F.

    Genome Biol. 2008;9(11):R164. Epub 2008 Nov 24.

    PMID:
    19025642
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Computational architecture of the yeast regulatory network.

    Maslov S, Sneppen K.

    Phys Biol. 2005 Nov 9;2(4):S94-100.

    PMID:
    16280626
    [PubMed - indexed for MEDLINE]
    18.

    Functional and evolutionary inference in gene networks: does topology matter?

    Siegal ML, Promislow DE, Bergman A.

    Genetica. 2007 Jan;129(1):83-103. Epub 2006 Aug 8.

    PMID:
    16897451
    [PubMed - indexed for MEDLINE]
    19.

    Robustness and evolvability in natural chemical resistance: identification of novel systems properties, biochemical mechanisms and regulatory interactions.

    Venancio TM, Balaji S, Geetha S, Aravind L.

    Mol Biosyst. 2010 Aug;6(8):1475-91. Epub 2010 Jun 2.

    PMID:
    20517567
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    A regulatory network analysis of phenotypic plasticity in yeast.

    Promislow D.

    Am Nat. 2005 May;165(5):515-23. Epub 2005 Feb 18.

    PMID:
    15795849
    [PubMed - indexed for MEDLINE]

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