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    Results: 1 to 20 of 141

    1.

    Prediction of guide strand of microRNAs from its sequence and secondary structure.

    Ahmed F, Ansari HR, Raghava GP.

    BMC Bioinformatics. 2009 Apr 9;10:105.PMID: 19358699 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Improving model predictions for RNA interference activities that use support vector machine regression by combining and filtering features.

    Peek AS.

    BMC Bioinformatics. 2007 Jun 6;8:182.PMID: 17553157 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    MiRFinder: an improved approach and software implementation for genome-wide fast microRNA precursor scans.

    Huang TH, Fan B, Rothschild MF, Hu ZL, Li K, Zhao SH.

    BMC Bioinformatics. 2007 Sep 17;8:341.PMID: 17868480 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Human RISC couples microRNA biogenesis and posttranscriptional gene silencing.

    Gregory RI, Chendrimada TP, Cooch N, Shiekhattar R.

    Cell. 2005 Nov 18;123(4):631-40. Epub 2005 Nov 3.PMID: 16271387 [PubMed - indexed for MEDLINE]Related articles

    5.

    Cleavage of the star strand facilitates assembly of some microRNAs into Ago2-containing silencing complexes in mammals.

    Shin C.

    Mol Cells. 2008 Sep 30;26(3):308-13. Epub 2008 Aug 27.PMID: 18728384 [PubMed - indexed for MEDLINE]Related articles

    6.

    MiRTif: a support vector machine-based microRNA target interaction filter.

    Yang Y, Wang YP, Li KB.

    BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S4.PMID: 19091027 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Structural features of microRNA (miRNA) precursors and their relevance to miRNA biogenesis and small interfering RNA/short hairpin RNA design.

    Krol J, Sobczak K, Wilczynska U, Drath M, Jasinska A, Kaczynska D, Krzyzosiak WJ.

    J Biol Chem. 2004 Oct 1;279(40):42230-9. Epub 2004 Aug 2.PMID: 15292246 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features.

    Jiang P, Wu H, Wang W, Ma W, Sun X, Lu Z.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W339-44. Epub 2007 Jun 6.PMID: 17553836 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Strand-specific 5'-O-methylation of siRNA duplexes controls guide strand selection and targeting specificity.

    Chen PY, Weinmann L, Gaidatzis D, Pei Y, Zavolan M, Tuschl T, Meister G.

    RNA. 2008 Feb;14(2):263-74. Epub 2007 Dec 19.PMID: 18094121 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Human microRNA prediction through a probabilistic co-learning model of sequence and structure.

    Nam JW, Shin KR, Han J, Lee Y, Kim VN, Zhang BT.

    Nucleic Acids Res. 2005 Jun 24;33(11):3570-81. Print 2005.PMID: 15987789 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Analysis of microRNA-target interactions by a target structure based hybridization model.

    Long D, Chan CY, Ding Y.

    Pac Symp Biocomput. 2008:64-74.PMID: 18232104 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Identification of clustered microRNAs using an ab initio prediction method.

    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M.

    BMC Bioinformatics. 2005 Nov 7;6:267.PMID: 16274478 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Prediction of nuclear proteins using SVM and HMM models.

    Kumar M, Raghava GP.

    BMC Bioinformatics. 2009 Jan 19;10:22.PMID: 19152693 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Sequence features associated with microRNA strand selection in humans and flies.

    Hu HY, Yan Z, Xu Y, Hu H, Menzel C, Zhou YH, Chen W, Khaitovich P.

    BMC Genomics. 2009 Sep 4;10:413.PMID: 19732433 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    HHMMiR: efficient de novo prediction of microRNAs using hierarchical hidden Markov models.

    Kadri S, Hinman V, Benos PV.

    BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S35.PMID: 19208136 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Dual role for argonautes in microRNA processing and posttranscriptional regulation of microRNA expression.

    Diederichs S, Haber DA.

    Cell. 2007 Dec 14;131(6):1097-108.PMID: 18083100 [PubMed - indexed for MEDLINE]Related articles

    17.

    Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine.

    Xue C, Li F, He T, Liu GP, Li Y, Zhang X.

    BMC Bioinformatics. 2005 Dec 29;6:310.PMID: 16381612 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Isolation and identification of gene-specific microRNAs.

    Lin SL, Chang DC, Ying SY.

    Methods Mol Biol. 2006;342:313-20. Review.PMID: 16957385 [PubMed - indexed for MEDLINE]Related articles

    19.

    In silico miRNA prediction in metazoan genomes: balancing between sensitivity and specificity.

    van der Burgt A, Fiers MW, Nap JP, van Ham RC.

    BMC Genomics. 2009 Apr 30;10:204.PMID: 19405940 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    A machine learning based method for the prediction of secretory proteins using amino acid composition, their order and similarity-search.

    Garg A, Raghava GP.

    In Silico Biol. 2008;8(2):129-40.PMID: 18928201 [PubMed - indexed for MEDLINE]Related articles

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