PubMed

A signature-based method for indexing cell cycle phase distribution from microarray profiles.

Mizuno H, Nakanishi Y, Ishii N, Sarai A, Kitada K.

BMC Genomics. 2009 Mar 30;10:137.PMID: 19331659 [PubMed - indexed for MEDLINE]Related articlesFree article

[Analysis of gene expression profiles in gastric cancer cell cycle]

Lan B, Liu BY, Cheng XH, Zhang J, Wang KK, Zhu ZG.

Zhonghua Zhong Liu Za Zhi. 2006 Aug;28(8):568-71. Chinese. PMID: 17236548 [PubMed - indexed for MEDLINE]Related articles

Prognostic meta-signature of breast cancer developed by two-stage mixture modeling of microarray data.

Shen R, Ghosh D, Chinnaiyan AM.

BMC Genomics. 2004 Dec 14;5(1):94.PMID: 15598354 [PubMed - indexed for MEDLINE]Related articlesFree article

Mining published lists of cancer related microarray experiments: identification of a gene expression signature having a critical role in cell-cycle control.

Finocchiaro G, Mancuso F, Muller H.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S14.PMID: 16351740 [PubMed - indexed for MEDLINE]Related articlesFree article

Prognostic breast cancer signature identified from 3D culture model accurately predicts clinical outcome across independent datasets.

Martin KJ, Patrick DR, Bissell MJ, Fournier MV.

PLoS One. 2008 Aug 20;3(8):e2994.PMID: 18714348 [PubMed - indexed for MEDLINE]Related articlesFree article

Detecting biological associations between genes based on the theory of phase synchronization.

Kim CS, Riikonen P, Salakoski T.

Biosystems. 2008 May;92(2):99-113. Epub 2008 Jan 11.PMID: 18289772 [PubMed - indexed for MEDLINE]Related articles

Identifying periodically expressed transcripts in microarray time series data.

Wichert S, Fokianos K, Strimmer K.

Bioinformatics. 2004 Jan 1;20(1):5-20.PMID: 14693803 [PubMed - indexed for MEDLINE]Related articlesFree article

Systematic identification of cell cycle regulated transcription factors from microarray time series data.

Cheng C, Li LM.

BMC Genomics. 2008 Mar 3;9:116.PMID: 18315882 [PubMed - indexed for MEDLINE]Related articlesFree article

Use of 70-gene signature to predict prognosis of patients with node-negative breast cancer: a prospective community-based feasibility study (RASTER).

Bueno-de-Mesquita JM, van Harten WH, Retel VP, van't Veer LJ, van Dam FS, Karsenberg K, Douma KF, van Tinteren H, Peterse JL, Wesseling J, Wu TS, Atsma D, Rutgers EJ, Brink G, Floore AN, Glas AM, Roumen RM, Bellot FE, van Krimpen C, Rodenhuis S, van de Vijver MJ, Linn SC.

Lancet Oncol. 2007 Dec;8(12):1079-87. Epub 2007 Nov 26. Erratum in: Lancet Oncol. 2008 Jan;9(1):10. PMID: 18042430 [PubMed - indexed for MEDLINE]Related articles

Aging impacts transcriptomes but not genomes of hormone-dependent breast cancers.

Yau C, Fedele V, Roydasgupta R, Fridlyand J, Hubbard A, Gray JW, Chew K, Dairkee SH, Moore DH, Schittulli F, Tommasi S, Paradiso A, Albertson DG, Benz CC.

Breast Cancer Res. 2007;9(5):R59.PMID: 17850661 [PubMed - indexed for MEDLINE]Related articlesFree article

Oncogenic pathway signatures in human cancers as a guide to targeted therapies.

Bild AH, Yao G, Chang JT, Wang Q, Potti A, Chasse D, Joshi MB, Harpole D, Lancaster JM, Berchuck A, Olson JA Jr, Marks JR, Dressman HK, West M, Nevins JR.

Nature. 2006 Jan 19;439(7074):353-7. Epub 2005 Nov 6.PMID: 16273092 [PubMed - indexed for MEDLINE]Related articles

Antitumoral actions of the anti-obesity drug orlistat (XenicalTM) in breast cancer cells: blockade of cell cycle progression, promotion of apoptotic cell death and PEA3-mediated transcriptional repression of Her2/neu (erbB-2) oncogene.

Menendez JA, Vellon L, Lupu R.

Ann Oncol. 2005 Aug;16(8):1253-67. Epub 2005 May 3.PMID: 15870086 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction potential of candidate biomarker sets identified and validated on gene expression data from multiple datasets.

Gormley M, Dampier W, Ertel A, Karacali B, Tozeren A.

BMC Bioinformatics. 2007 Oct 26;8:415.PMID: 17963508 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis.

Sotiriou C, Wirapati P, Loi S, Harris A, Fox S, Smeds J, Nordgren H, Farmer P, Praz V, Haibe-Kains B, Desmedt C, Larsimont D, Cardoso F, Peterse H, Nuyten D, Buyse M, Van de Vijver MJ, Bergh J, Piccart M, Delorenzi M.

J Natl Cancer Inst. 2006 Feb 15;98(4):262-72.PMID: 16478745 [PubMed - indexed for MEDLINE]Related articlesFree article

Novel clustering algorithm for microarray expression data in a truncated SVD space.

Horn D, Axel I.

Bioinformatics. 2003 Jun 12;19(9):1110-5. Erratum in: Bioinformatics. 2003 Oct 12;19(15):2004. PMID: 12801871 [PubMed - indexed for MEDLINE]Related articlesFree article

Optimization models for cancer classification: extracting gene interaction information from microarray expression data.

Antonov AV, Tetko IV, Mader MT, Budczies J, Mewes HW.

Bioinformatics. 2004 Mar 22;20(5):644-52. Epub 2004 Jan 22.PMID: 15033871 [PubMed - indexed for MEDLINE]Related articlesFree article

Data-driven approach to predict survival of cancer patients: estimation of microarray genes' prediction significance by Cox proportional hazard regression model.

Motakis E, Ivshina AV, Kuznetsov VA.

IEEE Eng Med Biol Mag. 2009 Jul-Aug;28(4):58-66. No abstract available. PMID: 19622426 [PubMed - indexed for MEDLINE]Related articles

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.

Culhane AC, Perrière G, Higgins DG.

BMC Bioinformatics. 2003 Nov 21;4:59.PMID: 14633289 [PubMed - indexed for MEDLINE]Related articlesFree article

Geminin predicts adverse clinical outcome in breast cancer by reflecting cell-cycle progression.

Gonzalez MA, Tachibana KE, Chin SF, Callagy G, Madine MA, Vowler SL, Pinder SE, Laskey RA, Coleman N.

J Pathol. 2004 Oct;204(2):121-30.PMID: 15376260 [PubMed - indexed for MEDLINE]Related articles

Meta-analysis of breast cancer microarray studies in conjunction with conserved cis-elements suggest patterns for coordinate regulation.

Smith DD, Saetrom P, Snøve O Jr, Lundberg C, Rivas GE, Glackin C, Larson GP.

BMC Bioinformatics. 2008 Jan 28;9:63.PMID: 18226260 [PubMed - indexed for MEDLINE]Related articlesFree article