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    Results: 1 to 20 of 229

    1.

    Evaluation of next generation sequencing platforms for population targeted sequencing studies.

    Harismendy O, Ng PC, Strausberg RL, Wang X, Stockwell TB, Beeson KY, Schork NJ, Murray SS, Topol EJ, Levy S, Frazer KA.

    Genome Biol. 2009;10(3):R32. Epub 2009 Mar 27.

    PMID:
    19327155
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Accurate detection and genotyping of SNPs utilizing population sequencing data.

    Bansal V, Harismendy O, Tewhey R, Murray SS, Schork NJ, Topol EJ, Frazer KA.

    Genome Res. 2010 Apr;20(4):537-45. Epub 2010 Feb 11.

    PMID:
    20150320
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Preparing a re-sequencing DNA library of 2 cancer candidate genes using the ligation-by-amplification protocol by two PCR reactions.

    Su Y, Lin L, Tian G, Chen C, Liu T, Xu X, Qi X, Zhang X, Yang H.

    Sci China C Life Sci. 2009 May;52(5):483-91. Epub 2009 May 27.

    PMID:
    19471873
    [PubMed - indexed for MEDLINE]
    5.

    SNP detection for massively parallel whole-genome resequencing.

    Li R, Li Y, Fang X, Yang H, Wang J, Kristiansen K, Wang J.

    Genome Res. 2009 Jun;19(6):1124-32. Epub 2009 May 6.

    PMID:
    19420381
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    DNA sequence capture and enrichment by microarray followed by next-generation sequencing for targeted resequencing: neurofibromatosis type 1 gene as a model.

    Chou LS, Liu CS, Boese B, Zhang X, Mao R.

    Clin Chem. 2010 Jan;56(1):62-72. Epub 2009 Nov 12.

    PMID:
    19910506
    [PubMed - indexed for MEDLINE]
    Free Article
    7.

    Microarray-based multicycle-enrichment of genomic subsets for targeted next-generation sequencing.

    Summerer D, Wu H, Haase B, Cheng Y, Schracke N, Stähler CF, Chee MS, Stähler PF, Beier M.

    Genome Res. 2009 Sep;19(9):1616-21. Epub 2009 Jul 28.

    PMID:
    19638418
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Design of association studies with pooled or un-pooled next-generation sequencing data.

    Kim SY, Li Y, Guo Y, Li R, Holmkvist J, Hansen T, Pedersen O, Wang J, Nielsen R.

    Genet Epidemiol. 2010 Jul;34(5):479-91.

    PMID:
    20552648
    [PubMed - indexed for MEDLINE]
    9.

    The complete genome of an individual by massively parallel DNA sequencing.

    Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT, Gomes X, Tartaro K, Niazi F, Turcotte CL, Irzyk GP, Lupski JR, Chinault C, Song XZ, Liu Y, Yuan Y, Nazareth L, Qin X, Muzny DM, Margulies M, Weinstock GM, Gibbs RA, Rothberg JM.

    Nature. 2008 Apr 17;452(7189):872-6.

    PMID:
    18421352
    [PubMed - indexed for MEDLINE]
    10.

    Exome sequencing of a multigenerational human pedigree.

    Hedges DJ, Burges D, Powell E, Almonte C, Huang J, Young S, Boese B, Schmidt M, Pericak-Vance MA, Martin E, Zhang X, Harkins TT, Züchner S.

    PLoS One. 2009 Dec 14;4(12):e8232. Erratum in: PLoS One. 2009;4(12). doi: 10.1371/annotation/b0fe9dd5-16e1-4b50-b590-263518fbd5eb. Hedges, Dale [corrected to Hedges, Dale J].

    PMID:
    20011588
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using next generation sequence.

    Blanca JM, Pascual L, Ziarsolo P, Nuez F, Cañizares J.

    BMC Genomics. 2011 Jun 2;12:285. doi: 10.1186/1471-2164-12-285.

    PMID:
    21635747
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.

    Hong H, Su Z, Ge W, Shi L, Perkins R, Fang H, Xu J, Chen JJ, Han T, Kaput J, Fuscoe JC, Tong W.

    BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S17.

    PMID:
    18793462
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Comparison of sequence reads obtained from three next-generation sequencing platforms.

    Suzuki S, Ono N, Furusawa C, Ying BW, Yomo T.

    PLoS One. 2011;6(5):e19534. Epub 2011 May 17.

    PMID:
    21611185
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Massively parallel sequencing of ataxia genes after array-based enrichment.

    Hoischen A, Gilissen C, Arts P, Wieskamp N, van der Vliet W, Vermeer S, Steehouwer M, de Vries P, Meijer R, Seiqueros J, Knoers NV, Buckley MF, Scheffer H, Veltman JA.

    Hum Mutat. 2010 Apr;31(4):494-9.

    PMID:
    20151403
    [PubMed - indexed for MEDLINE]
    15.

    Next-generation sequencing methods: impact of sequencing accuracy on SNP discovery.

    Chan EY.

    Methods Mol Biol. 2009;578:95-111.

    PMID:
    19768588
    [PubMed - indexed for MEDLINE]
    16.

    High throughput sequencing in mice: a platform comparison identifies a preponderance of cryptic SNPs.

    Walter NA, Bottomly D, Laderas T, Mooney MA, Darakjian P, Searles RP, Harrington CA, McWeeney SK, Hitzemann R, Buck KJ.

    BMC Genomics. 2009 Aug 17;10:379.

    PMID:
    19686600
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    A probabilistic method for the detection and genotyping of small indels from population-scale sequence data.

    Bansal V, Libiger O.

    Bioinformatics. 2011 Aug 1;27(15):2047-53. Epub 2011 Jun 7.

    PMID:
    21653520
    [PubMed - indexed for MEDLINE]
    18.

    Comparison of three targeted enrichment strategies on the SOLiD sequencing platform.

    Hedges DJ, Guettouche T, Yang S, Bademci G, Diaz A, Andersen A, Hulme WF, Linker S, Mehta A, Edwards YJ, Beecham GW, Martin ER, Pericak-Vance MA, Zuchner S, Vance JM, Gilbert JR.

    PLoS One. 2011 Apr 29;6(4):e18595.

    PMID:
    21559511
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Targeted high throughput sequencing of a cancer-related exome subset by specific sequence capture with a fully automated microarray platform.

    Summerer D, Schracke N, Wu H, Cheng Y, Bau S, Stähler CF, Stähler PF, Beier M.

    Genomics. 2010 Apr;95(4):241-6. Epub 2010 Feb 6.

    PMID:
    20138981
    [PubMed - indexed for MEDLINE]
    20.

    Accurate SNP and mutation detection by targeted custom microarray-based genomic enrichment of short-fragment sequencing libraries.

    Mokry M, Feitsma H, Nijman IJ, de Bruijn E, van der Zaag PJ, Guryev V, Cuppen E.

    Nucleic Acids Res. 2010 Jun;38(10):e116. Epub 2010 Feb 17.

    PMID:
    20164091
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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