My NCBI | Sign In
RSS Settings
  • Search:

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

    Results: 1 to 20 of 99

    1.

    In silico prioritisation of candidate genes for prokaryotic gene function discovery: an application of phylogenetic profiles.

    Lin FP, Coiera E, Lan R, Sintchenko V.

    BMC Bioinformatics. 2009 Mar 17;10:86.PMID: 19292914 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    GO4genome: a prokaryotic phylogeny based on genome organization.

    Merkl R, Wiezer A.

    J Mol Evol. 2009 May;68(5):550-62. Epub 2009 May 13.PMID: 19436929 [PubMed - indexed for MEDLINE]Related articles

    3.

    Comparative assessment of performance and genome dependence among phylogenetic profiling methods.

    Snitkin ES, Gustafson AM, Mellor J, Wu J, DeLisi C.

    BMC Bioinformatics. 2006 Sep 27;7:420.PMID: 17005048 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Identification of functional links between genes using phylogenetic profiles.

    Wu J, Kasif S, DeLisi C.

    Bioinformatics. 2003 Aug 12;19(12):1524-30.PMID: 12912833 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    An improved method for identifying functionally linked proteins using phylogenetic profiles.

    Cokus S, Mizutani S, Pellegrini M.

    BMC Bioinformatics. 2007 May 22;8 Suppl 4:S7.PMID: 17570150 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

    Besemer J, Lomsadze A, Borodovsky M.

    Nucleic Acids Res. 2001 Jun 15;29(12):2607-18.PMID: 11410670 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Methods in comparative genomics: genome correspondence, gene identification and regulatory motif discovery.

    Kellis M, Patterson N, Birren B, Berger B, Lander ES.

    J Comput Biol. 2004;11(2-3):319-55.PMID: 15285895 [PubMed - indexed for MEDLINE]Related articles

    8.

    Integrating genomic data to predict transcription factor binding.

    Holloway DT, Kon M, DeLisi C.

    Genome Inform. 2005;16(1):83-94.PMID: 16362910 [PubMed - indexed for MEDLINE]Related articles

    9.

    A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.

    Podell S, Gaasterland T, Allen EE.

    BMC Bioinformatics. 2008 Oct 7;9:419.PMID: 18840280 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

    Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

    BMC Bioinformatics. 2008 Mar 26;9:170.PMID: 18366802 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Predicting protein linkages in bacteria: which method is best depends on task.

    Karimpour-Fard A, Leach SM, Gill RT, Hunter LE.

    BMC Bioinformatics. 2008 Sep 24;9:397.PMID: 18816389 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Genomic functional annotation using co-evolution profiles of gene clusters.

    Zheng Y, Roberts RJ, Kasif S.

    Genome Biol. 2002 Oct 10;3(11):RESEARCH0060. Epub 2002 Oct 10.PMID: 12429059 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets.

    Lin GN, Cai Z, Lin G, Chakraborty S, Xu D.

    BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S5.PMID: 19208152 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    A computational approach to identify genes for functional RNAs in genomic sequences.

    Carter RJ, Dubchak I, Holbrook SR.

    Nucleic Acids Res. 2001 Oct 1;29(19):3928-38.PMID: 11574674 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context.

    Wolf YI, Rogozin IB, Kondrashov AS, Koonin EV.

    Genome Res. 2001 Mar;11(3):356-72.PMID: 11230160 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Predicting protein function with hierarchical phylogenetic profiles: the Gene3D Phylo-Tuner method applied to eukaryotic genomes.

    Ranea JA, Yeats C, Grant A, Orengo CA.

    PLoS Comput Biol. 2007 Nov;3(11):e237. Epub 2007 Oct 18.PMID: 18052542 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes.

    Zhu H, Hu GQ, Yang YF, Wang J, She ZS.

    BMC Bioinformatics. 2007 Mar 16;8:97.PMID: 17367537 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Speeding disease gene discovery by sequence based candidate prioritization.

    Adie EA, Adams RR, Evans KL, Porteous DJ, Pickard BS.

    BMC Bioinformatics. 2005 Mar 14;6:55.PMID: 15766383 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Functional genomics and proteomics in the clinical neurosciences: data mining and bioinformatics.

    Phan JH, Quo CF, Wang MD.

    Prog Brain Res. 2006;158:83-108. Review.PMID: 17027692 [PubMed - indexed for MEDLINE]Related articles

    20.

    ProGenExpress: visualization of quantitative data on prokaryotic genomes.

    Watson M.

    BMC Bioinformatics. 2005 Apr 13;6:98.PMID: 15829007 [PubMed - indexed for MEDLINE]Related articlesFree article

    Display Settings:

    Format
    Items per page
    Sort by

    Send to:

    Choose Destination

    Supplemental Content

    Filter your results:

    Find related data

    Recent activity