PubMed

Multiple sequence-directed possibilities provide a pool of nucleosome position choices in different states of activity of a gene.

Vinayachandran V, Pusarla RH, Bhargava P.

Epigenetics Chromatin. 2009 Mar 16;2(1):4.PMID: 19291282 [PubMed - in process]Related articlesFree article

Changing the DNA landscape: putting a SPN on chromatin.

Formosa T.

Curr Top Microbiol Immunol. 2003;274:171-201. Review.PMID: 12596908 [PubMed - indexed for MEDLINE]Related articles

Multiple aspects of ATP-dependent nucleosome translocation by RSC and Mi-2 are directed by the underlying DNA sequence.

van Vugt JJ, de Jager M, Murawska M, Brehm A, van Noort J, Logie C.

PLoS One. 2009 Jul 23;4(7):e6345.PMID: 19626125 [PubMed - indexed for MEDLINE]Related articlesFree article

Nucleosomes reconstituted in vitro on mouse mammary tumor virus B region DNA occupy multiple translational and rotational frames.

Roberts MS, Fragoso G, Hager GL.

Biochemistry. 1995 Sep 26;34(38):12470-80.PMID: 7547993 [PubMed - indexed for MEDLINE]Related articles

Chromatin structure and expression of a gene transcribed by RNA polymerase III are independent of H2A.Z deposition.

Arimbasseri AG, Bhargava P.

Mol Cell Biol. 2008 Apr;28(8):2598-607. Epub 2008 Feb 11.PMID: 18268003 [PubMed - indexed for MEDLINE]Related articlesFree article

The core histone tail domains contribute to sequence-dependent nucleosome positioning.

Yang Z, Zheng C, Hayes JJ.

J Biol Chem. 2007 Mar 16;282(11):7930-8. Epub 2007 Jan 17.PMID: 17234628 [PubMed - indexed for MEDLINE]Related articlesFree article

Positioned nucleosomes due to sequential remodeling of the yeast U6 small nuclear RNA chromatin are essential for its transcriptional activation.

Shivaswamy S, Bhargava P.

J Biol Chem. 2006 Apr 14;281(15):10461-72. Epub 2006 Feb 6.PMID: 16461347 [PubMed - indexed for MEDLINE]Related articlesFree article

Two distinct modes of nucleosome modulation associated with different degrees of dependence of nucleosome positioning on the underlying DNA sequence.

Dai Z, Dai X, Xiang Q, Feng J, Wang J, Deng Y, He C.

BMC Genomics. 2009 Jan 10;10:15.PMID: 19134214 [PubMed - indexed for MEDLINE]Related articlesFree article

Predicting nucleosome positions on the DNA: combining intrinsic sequence preferences and remodeler activities.

Teif VB, Rippe K.

Nucleic Acids Res. 2009 Sep;37(17):5641-55. Epub 2009 Jul 22.PMID: 19625488 [PubMed - indexed for MEDLINE]Related articlesFree article

[Nucleosome positioning within neomycinphosphotransferase gene (NPTII) on yeast plasmid in repressed and active state]

Kir'ianov GI, Isaeva LV, Kintsurashvili LN, Zakharova MG.

Mol Biol (Mosk). 2008 Nov-Dec;42(6):1030-9. Russian. PMID: 19140324 [PubMed - indexed for MEDLINE]Related articles

Nucleosome positioning in relation to nucleosome spacing and DNA sequence-specific binding of a protein.

Pusarla RH, Vinayachandran V, Bhargava P.

FEBS J. 2007 May;274(9):2396-410. Epub 2007 Apr 5.PMID: 17419736 [PubMed - indexed for MEDLINE]Related articles

Artificial nucleosome positioning sequences tested in yeast minichromosomes: a strong rotational setting is not sufficient to position nucleosomes in vivo.

Tanaka S, Zatchej M, Thoma F.

EMBO J. 1992 Mar;11(3):1187-93.PMID: 1547779 [PubMed - indexed for MEDLINE]Related articlesFree article

Distinct modes of regulation by chromatin encoded through nucleosome positioning signals.

Field Y, Kaplan N, Fondufe-Mittendorf Y, Moore IK, Sharon E, Lubling Y, Widom J, Segal E.

PLoS Comput Biol. 2008 Nov;4(11):e1000216. Epub 2008 Nov 7.PMID: 18989395 [PubMed - indexed for MEDLINE]Related articlesFree article

Nucleosomes are translationally positioned on the active allele and rotationally positioned on the inactive allele of the HPRT promoter.

Chen C, Yang TP.

Mol Cell Biol. 2001 Nov;21(22):7682-95.PMID: 11604504 [PubMed - indexed for MEDLINE]Related articlesFree article

Control of nucleosome positions by DNA sequence and remodeling machines.

Schnitzler GR.

Cell Biochem Biophys. 2008;51(2-3):67-80. Epub 2008 Jun 10. Review.PMID: 18543113 [PubMed - indexed for MEDLINE]Related articles

DNA sequence plays a major role in determining nucleosome positions in yeast CUP1 chromatin.

Shen CH, Clark DJ.

J Biol Chem. 2001 Sep 14;276(37):35209-16. Epub 2001 Jul 18.PMID: 11461917 [PubMed - indexed for MEDLINE]Related articlesFree article

A genomic code for nucleosome positioning.

Segal E, Fondufe-Mittendorf Y, Chen L, Thåström A, Field Y, Moore IK, Wang JP, Widom J.

Nature. 2006 Aug 17;442(7104):772-8. Epub 2006 Jul 19.PMID: 16862119 [PubMed - indexed for MEDLINE]Related articlesFree article

A modular enhancer is differentially regulated by GATA and NFAT elements that direct different tissue-specific patterns of nucleosome positioning and inducible chromatin remodeling.

Bert AG, Johnson BV, Baxter EW, Cockerill PN.

Mol Cell Biol. 2007 Apr;27(8):2870-85. Epub 2007 Feb 5.PMID: 17283044 [PubMed - indexed for MEDLINE]Related articlesFree article

New insights into two distinct nucleosome distributions: comparison of cross-platform positioning datasets in the yeast genome.

Feng J, Dai X, Xiang Q, Dai Z, Wang J, Deng Y, He C.

BMC Genomics. 2010 Jan 15;11:33.PMID: 20078849 [PubMed - in process]Related articlesFree article

In silico approaches reveal the potential for DNA sequence-dependent histone octamer affinity to influence chromatin structure in vivo.

Fraser RM, Allan J, Simmen MW.

J Mol Biol. 2006 Dec 8;364(4):582-98. Epub 2006 Sep 7.PMID: 17027853 [PubMed - indexed for MEDLINE]Related articles