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    Results: 1 to 20 of 141

    1.

    Uncovering metabolic pathways relevant to phenotypic traits of microbial genomes.

    Kastenmüller G, Schenk ME, Gasteiger J, Mewes HW.

    Genome Biol. 2009;10(3):R28. Epub 2009 Mar 10.

    PMID:
    19284550
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Toward the automated generation of genome-scale metabolic networks in the SEED.

    DeJongh M, Formsma K, Boillot P, Gould J, Rycenga M, Best A.

    BMC Bioinformatics. 2007 Apr 26;8:139.

    PMID:
    17462086
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Metabolic network model of a human oral pathogen.

    Mazumdar V, Snitkin ES, Amar S, Segrè D.

    J Bacteriol. 2009 Jan;191(1):74-90. Epub 2008 Oct 17.

    PMID:
    18931137
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Genomics enabled approaches in strain engineering.

    Warner JR, Patnaik R, Gill RT.

    Curr Opin Microbiol. 2009 Jun;12(3):223-30. Epub 2009 May 19. Review.

    PMID:
    19467921
    [PubMed - indexed for MEDLINE]
    6.

    The role of gene fusions in the evolution of metabolic pathways: the histidine biosynthesis case.

    Fani R, Brilli M, Fondi M, Lió P.

    BMC Evol Biol. 2007 Aug 16;7 Suppl 2:S4.

    PMID:
    17767732
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Genomic encyclopedia of sugar utilization pathways in the Shewanella genus.

    Rodionov DA, Yang C, Li X, Rodionova IA, Wang Y, Obraztsova AY, Zagnitko OP, Overbeek R, Romine MF, Reed S, Fredrickson JK, Nealson KH, Osterman AL.

    BMC Genomics. 2010 Sep 13;11:494.

    PMID:
    20836887
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes.

    Cortez D, Forterre P, Gribaldo S.

    Genome Biol. 2009;10(6):R65. Epub 2009 Jun 16.

    PMID:
    19531232
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Reactome array: forging a link between metabolome and genome.

    Beloqui A, Guazzaroni ME, Pazos F, Vieites JM, Godoy M, Golyshina OV, Chernikova TN, Waliczek A, Silva-Rocha R, Al-Ramahi Y, La Cono V, Mendez C, Salas JA, Solano R, Yakimov MM, Timmis KN, Golyshin PN, Ferrer M.

    Science. 2009 Oct 9;326(5950):252-7. Retraction in: Beloqui A, Guazzaroni ME, Pazos F, Vieites JM, Godoy M, Golyshina OV, Chernikova TN, Waliczek A, Silva-Rocha R, Al-Ramahi Y, La Cono V, Mendez C, Salas JA, Solano R, Yakimov MM, Timmis KN, Golyshin PN, Ferrer M. Science. 2010 Nov 12;330(6006):912.

    PMID:
    19815770
    [PubMed - indexed for MEDLINE]
    10.

    Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria.

    Zucko J, Dunlap WC, Shick JM, Cullum J, Cercelet F, Amin B, Hammen L, Lau T, Williams J, Hranueli D, Long PF.

    BMC Genomics. 2010 Nov 11;11:628.

    PMID:
    21070645
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Ab initio genotype-phenotype association reveals intrinsic modularity in genetic networks.

    Slonim N, Elemento O, Tavazoie S.

    Mol Syst Biol. 2006;2:2006.0005. Epub 2006 Jan 31.

    PMID:
    16732191
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Compensatory ability to null mutation in metabolic networks.

    Jiang D, Zhou S, Chen YP.

    Biotechnol Bioeng. 2009 Jun 1;103(2):361-9.

    PMID:
    19160379
    [PubMed - indexed for MEDLINE]
    13.

    A universal operon predictor for prokaryotic genomes.

    Li G, Che D, Xu Y.

    J Bioinform Comput Biol. 2009 Feb;7(1):19-38.

    PMID:
    19226658
    [PubMed - indexed for MEDLINE]
    14.

    Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing.

    Kröber M, Bekel T, Diaz NN, Goesmann A, Jaenicke S, Krause L, Miller D, Runte KJ, Viehöver P, Pühler A, Schlüter A.

    J Biotechnol. 2009 Jun 1;142(1):38-49. Epub 2009 Feb 27.

    PMID:
    19480946
    [PubMed - indexed for MEDLINE]
    15.

    A parsimony approach to biological pathway reconstruction/inference for genomes and metagenomes.

    Ye Y, Doak TG.

    PLoS Comput Biol. 2009 Aug;5(8):e1000465. Epub 2009 Aug 14.

    PMID:
    19680427
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    How to find "missing" genes.

    Gerlt JA.

    Chem Biol. 2003 Dec;10(12):1141-2.

    PMID:
    14700618
    [PubMed - indexed for MEDLINE]
    17.

    Genome-scale reconstruction of metabolic network for a halophilic extremophile, Chromohalobacter salexigens DSM 3043.

    Ates O, Oner ET, Arga KY.

    BMC Syst Biol. 2011 Jan 21;5:12.

    PMID:
    21251315
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Metabolic-network-driven analysis of bacterial ecological strategies.

    Freilich S, Kreimer A, Borenstein E, Yosef N, Sharan R, Gophna U, Ruppin E.

    Genome Biol. 2009;10(6):R61. Epub 2009 Jun 5.

    PMID:
    19500338
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    When DNA replication and protein synthesis come together.

    Berthon J, Fujikane R, Forterre P.

    Trends Biochem Sci. 2009 Sep;34(9):429-34. Epub 2009 Sep 2.

    PMID:
    19729310
    [PubMed - indexed for MEDLINE]
    20.

    CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea.

    Sorek R, Kunin V, Hugenholtz P.

    Nat Rev Microbiol. 2008 Mar;6(3):181-6. Review.

    PMID:
    18157154
    [PubMed - indexed for MEDLINE]

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