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Adaptable data management for systems biology investigations.

Boyle J, Rovira H, Cavnor C, Burdick D, Killcoyne S, Shmulevich I.

BMC Bioinformatics. 2009 Mar 6;10:79.PMID: 19265554 [PubMed - indexed for MEDLINE]Related articlesFree article

MicroGen: a MIAME compliant web system for microarray experiment information and workflow management.

Burgarella S, Cattaneo D, Pinciroli F, Masseroli M.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S6.PMID: 16351755 [PubMed - indexed for MEDLINE]Related articlesFree article

A service-oriented grid infrastructure for biomedical data and compute services.

Arbona A, Benkner S, Engelbrecht G, Fingberg J, Hofmann M, Kumpf K, Lonsdale G, Woehrer A.

IEEE Trans Nanobioscience. 2007 Jun;6(2):136-41.PMID: 17695748 [PubMed - indexed for MEDLINE]Related articles

Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalised Data Structures.

Koehler J, Rawlings C, Verrier P, Mitchell R, Skusa A, Ruegg A, Philippi S.

In Silico Biol. 2005;5(1):33-44.PMID: 15972003 [PubMed - indexed for MEDLINE]Related articlesFree article

Design and implementation of a generalized laboratory data model.

Wendl MC, Smith S, Pohl CS, Dooling DJ, Chinwalla AT, Crouse K, Hepler T, Leong S, Carmichael L, Nhan M, Oberkfell BJ, Mardis ER, Hillier LW, Wilson RK.

BMC Bioinformatics. 2007 Sep 26;8:362.PMID: 17897463 [PubMed - indexed for MEDLINE]Related articlesFree article

Classification of information fusion methods in systems biology.

Synnergren J, Olsson B, Gamalielsson J.

In Silico Biol. 2009;9(3):65-76.PMID: 19795566 [PubMed - indexed for MEDLINE]Related articles

CEBS object model for systems biology data, SysBio-OM.

Xirasagar S, Gustafson S, Merrick BA, Tomer KB, Stasiewicz S, Chan DD, Yost KJ 3rd, Yates JR 3rd, Sumner S, Xiao N, Waters MD.

Bioinformatics. 2004 Sep 1;20(13):2004-15. Epub 2004 Mar 25.PMID: 15044233 [PubMed - indexed for MEDLINE]Related articlesFree article

Workflow based framework for life science informatics.

Tiwari A, Sekhar AK.

Comput Biol Chem. 2007 Oct;31(5-6):305-19. Epub 2007 Aug 19. Review.PMID: 17931570 [PubMed - indexed for MEDLINE]Related articles

An integrative approach for biological data mining and visualisation.

Gopalacharyulu PV, Lindfors E, Miettinen J, Bounsaythip CK, Oresic M.

Int J Data Min Bioinform. 2008;2(1):54-77.PMID: 18399328 [PubMed - indexed for MEDLINE]Related articles

MARS: microarray analysis, retrieval, and storage system.

Maurer M, Molidor R, Sturn A, Hartler J, Hackl H, Stocker G, Prokesch A, Scheideler M, Trajanoski Z.

BMC Bioinformatics. 2005 Apr 18;6:101.PMID: 15836795 [PubMed - indexed for MEDLINE]Related articlesFree article

Creating reference datasets for systems biology applications using text mining.

Krallinger M, Rojas AM, Valencia A.

Ann N Y Acad Sci. 2009 Mar;1158:14-28.PMID: 19348628 [PubMed - indexed for MEDLINE]Related articles

Biological knowledge management: the emerging role of the Semantic Web technologies.

Antezana E, Kuiper M, Mironov V.

Brief Bioinform. 2009 Jul;10(4):392-407. Epub 2009 May 19. Review.PMID: 19457869 [PubMed - indexed for MEDLINE]Related articles

GeneNotes--a novel information management software for biologists.

Hong P, Wong WH.

BMC Bioinformatics. 2005 Feb 1;6:20.PMID: 15686593 [PubMed - indexed for MEDLINE]Related articlesFree article

MausDB: an open source application for phenotype data and mouse colony management in large-scale mouse phenotyping projects.

Maier H, Lengger C, Simic B, Fuchs H, Gailus-Durner V, Hrabé de Angelis M.

BMC Bioinformatics. 2008 Mar 26;9:169.PMID: 18366799 [PubMed - indexed for MEDLINE]Related articlesFree article

Systems biology driven software design for the research enterprise.

Boyle J, Cavnor C, Killcoyne S, Shmulevich I.

BMC Bioinformatics. 2008 Jun 25;9:295.PMID: 18578887 [PubMed - indexed for MEDLINE]Related articlesFree article

Alkahest NuclearBLAST : a user-friendly BLAST management and analysis system.

Diener SE, Houfek TD, Kalat SE, Windham DE, Burke M, Opperman C, Dean RA.

BMC Bioinformatics. 2005 Jun 15;6:147.PMID: 15958161 [PubMed - indexed for MEDLINE]Related articlesFree article

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA.

BMC Bioinformatics. 2007 Nov 2;8:426.PMID: 17980028 [PubMed - indexed for MEDLINE]Related articlesFree article

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

BMC Bioinformatics. 2006 Nov 23;7:513.PMID: 17123449 [PubMed - indexed for MEDLINE]Related articlesFree article

flowCore: a Bioconductor package for high throughput flow cytometry.

Hahne F, LeMeur N, Brinkman RR, Ellis B, Haaland P, Sarkar D, Spidlen J, Strain E, Gentleman R.

BMC Bioinformatics. 2009 Apr 9;10:106.PMID: 19358741 [PubMed - indexed for MEDLINE]Related articlesFree article

MADGE: scalable distributed data management software for cDNA microarrays.

McIndoe RA, Lanzen A, Hurtz K.

Bioinformatics. 2003 Jan;19(1):87-9.PMID: 12499297 [PubMed - indexed for MEDLINE]Related articlesFree article