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    Results: 1 to 20 of 165

    1.

    Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees.

    Toleno DM, Renaud G, Wolfsberg TG, Islam M, Wildman DE, Siegmund KD, Hacia JG.

    BMC Bioinformatics. 2009 Mar 5;10:77.PMID: 19265541 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.

    Carter SL, Eklund AC, Mecham BH, Kohane IS, Szallasi Z.

    BMC Bioinformatics. 2005 Apr 25;6:107.PMID: 15850491 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Transcript-specific expression profiles derived from sequence-based analysis of standard microarrays.

    Moll AG, Lindenmeyer MT, Kretzler M, Nelson PJ, Zimmer R, Cohen CD.

    PLoS One. 2009;4(3):e4702. Epub 2009 Mar 11.PMID: 19277110 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    In vitro identification and in silico utilization of interspecies sequence similarities using GeneChip technology.

    Grigoryev DN, Ma SF, Simon BA, Irizarry RA, Ye SQ, Garcia JG.

    BMC Genomics. 2005 May 4;6(1):62.PMID: 15871745 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Long versus short oligonucleotide microarrays for the study of gene expression in nonhuman primates.

    Walker SJ, Wang Y, Grant KA, Chan F, Hellmann GM.

    J Neurosci Methods. 2006 Apr 15;152(1-2):179-89. Epub 2005 Oct 25.PMID: 16253343 [PubMed - indexed for MEDLINE]Related articles

    6.

    Using high-density exon arrays to profile gene expression in closely related species.

    Lin L, Liu S, Brockway H, Seok J, Jiang P, Wong WH, Xing Y.

    Nucleic Acids Res. 2009 Jul;37(12):e90. Epub 2009 May 27.PMID: 19474342 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Cross-species analysis of gene expression in non-model mammals: reproducibility of hybridization on high density oligonucleotide microarrays.

    Nieto-Díaz M, Pita-Thomas W, Nieto-Sampedro M.

    BMC Genomics. 2007 Apr 3;8:89.PMID: 17407579 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Combining gene expression data from different generations of oligonucleotide arrays.

    Hwang KB, Kong SW, Greenberg SA, Park PJ.

    BMC Bioinformatics. 2004 Oct 25;5:159.PMID: 15504239 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: high-resolution annotation for microarrays.

    Lu J, Lee JC, Salit ML, Cam MC.

    BMC Bioinformatics. 2007 Mar 29;8:108.PMID: 17394657 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

    Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

    Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.PMID: 15117752 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data.

    Shedden K, Chen W, Kuick R, Ghosh D, Macdonald J, Cho KR, Giordano TJ, Gruber SB, Fearon ER, Taylor JM, Hanash S.

    BMC Bioinformatics. 2005 Feb 10;6:26.PMID: 15705192 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Calculation of reliable transcript levels of annotated genes on the basis of multiple probe-sets in Affymetrix microarrays.

    Jaksik R, Polańska J, Herok R, Rzeszowska-Wolny J.

    Acta Biochim Pol. 2009;56(2):271-7. Epub 2009 May 12.PMID: 19436837 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.

    Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR.

    BMC Genomics. 2006 Mar 21;7:59.PMID: 16551369 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays.

    Bischoff SR, Tsai S, Hardison NE, York AM, Freking BA, Nonneman D, Rohrer G, Piedrahita JA.

    BMC Genomics. 2008 May 29;9:252.PMID: 18510738 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    High-density rhesus macaque oligonucleotide microarray design using early-stage rhesus genome sequence information and human genome annotations.

    Wallace JC, Korth MJ, Paeper B, Proll SC, Thomas MJ, Magness CL, Iadonato SP, Nelson C, Katze MG.

    BMC Genomics. 2007 Jan 23;8:28.PMID: 17244361 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Sex genes for genomic analysis in human brain: internal controls for comparison of probe level data extraction.

    Galfalvy HC, Erraji-Benchekroun L, Smyrniotopoulos P, Pavlidis P, Ellis SP, Mann JJ, Sibille E, Arango V.

    BMC Bioinformatics. 2003 Sep 8;4:37. Epub 2003 Sep 8.PMID: 12962547 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Improving the sensitivity and specificity of gene expression analysis in highly related organisms through the use of electronic masks.

    Nagpal S, Karaman MW, Timmerman MM, Ho VV, Pike BL, Hacia JG.

    Nucleic Acids Res. 2004 Mar 18;32(5):e51.PMID: 15031318 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.

    Alberts R, Terpstra P, Hardonk M, Bystrykh LV, de Haan G, Breitling R, Nap JP, Jansen RC.

    BMC Bioinformatics. 2007 Apr 20;8:132.PMID: 17448222 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips.

    Stalteri MA, Harrison AP.

    BMC Bioinformatics. 2007 Jan 15;8:13.PMID: 17224057 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

    Kuhn A, Luthi-Carter R, Delorenzi M.

    BMC Bioinformatics. 2008 Jan 17;9:26.PMID: 18201381 [PubMed - indexed for MEDLINE]Related articlesFree article

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