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    Results: 1 to 20 of 93

    1.

    Asymmetric relationships between proteins shape genome evolution.

    Notebaart RA, Kensche PR, Huynen MA, Dutilh BE.

    Genome Biol. 2009 Feb 12;10(2):R19.

    PMID:
    19216750
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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    2.

    Final Report on Carcinogens Background Document for Formaldehyde.

    National Toxicology Program.

    Rep Carcinog Backgr Doc. 2010 Jan;(10-5981):i-512.

    PMID:
    20737003
    [PubMed - as supplied by publisher]

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    3.

    Preferential attachment in the evolution of metabolic networks.

    Light S, Kraulis P, Elofsson A.

    BMC Genomics. 2005 Nov 10;6:159.

    PMID:
    16281983
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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    4.

    Influence of metabolic network structure and function on enzyme evolution.

    Vitkup D, Kharchenko P, Wagner A.

    Genome Biol. 2006;7(5):R39. Epub 2006 May 9.

    PMID:
    16684370
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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    5.

    Principles of transcriptional regulation and evolution of the metabolic system in E. coli.

    Seshasayee AS, Fraser GM, Babu MM, Luscombe NM.

    Genome Res. 2009 Jan;19(1):79-91. Epub 2008 Oct 3.

    PMID:
    18836036
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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    6.

    Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes.

    Mirkin BG, Fenner TI, Galperin MY, Koonin EV.

    BMC Evol Biol. 2003 Jan 6;3:2. Epub 2003 Jan 6.

    PMID:
    12515582
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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    7.

    The evolution of control and distribution of adaptive mutations in a metabolic pathway.

    Wright KM, Rausher MD.

    Genetics. 2010 Feb;184(2):483-502. Epub 2009 Dec 4.

    PMID:
    19966064
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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    8.

    Final Report on Carcinogens Background Document for Styrene.

    National Toxicology Program.

    Rep Carcinog Backgr Doc. 2008 Sep;(8-5978):i-398.

    PMID:
    20737009
    [PubMed - as supplied by publisher]

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    9.

    A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

    Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

    Genome Biol. 2004;5(2):R7. Epub 2004 Jan 15.

    PMID:
    14759257
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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    10.

    Computational identification of altered metabolism using gene expression and metabolic pathways.

    Nam H, Lee J, Lee D.

    Biotechnol Bioeng. 2009 Jul 1;103(4):835-43.

    PMID:
    19378263
    [PubMed - indexed for MEDLINE]

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    11.

    Insights on the evolution of metabolic networks of unicellular translationally biased organisms from transcriptomic data and sequence analysis.

    Carbone A, Madden R.

    J Mol Evol. 2005 Oct;61(4):456-69. Epub 2005 Sep 26.

    PMID:
    16187158
    [PubMed - indexed for MEDLINE]

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    12.

    Diploidy and the selective advantage for sexual reproduction in unicellular organisms.

    Kleiman M, Tannenbaum E.

    Theory Biosci. 2009 Nov;128(4):249-85. Epub 2009 Nov 10.

    PMID:
    19902285
    [PubMed - indexed for MEDLINE]

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    13.

    Three serendipitous pathways in E. coli can bypass a block in pyridoxal-5'-phosphate synthesis.

    Kim J, Kershner JP, Novikov Y, Shoemaker RK, Copley SD.

    Mol Syst Biol. 2010 Nov 30;6:436.

    PMID:
    21119630
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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    14.

    Homology, pathway distance and chromosomal localization of the small molecule metabolism enzymes in Escherichia coli.

    Rison SC, Teichmann SA, Thornton JM.

    J Mol Biol. 2002 May 3;318(3):911-32.

    PMID:
    12054833
    [PubMed - indexed for MEDLINE]

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    15.

    Evolutionary constraints permeate large metabolic networks.

    Wagner A.

    BMC Evol Biol. 2009 Sep 11;9:231.

    PMID:
    19747381
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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    16.

    Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways.

    Mano A, Tuller T, Béjà O, Pinter RY.

    BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S38.

    PMID:
    20122211
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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    17.

    Sequence analyses and evolutionary relationships among the energy-coupling proteins Enzyme I and HPr of the bacterial phosphoenolpyruvate: sugar phosphotransferase system.

    Reizer J, Hoischen C, Reizer A, Pham TN, Saier MH Jr.

    Protein Sci. 1993 Apr;2(4):506-21.

    PMID:
    7686067
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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    18.

    Genes encoding hub and bottleneck enzymes of the Arabidopsis metabolic network preferentially retain homeologs through whole genome duplication.

    Wu X, Qi X.

    BMC Evol Biol. 2010 May 18;10:145.

    PMID:
    20478072
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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    19.

    Computational analysis of phenotypic space in heterologous polyketide biosynthesis--applications to Escherichia coli, Bacillus subtilis, and Saccharomyces cerevisiae.

    Boghigian BA, Lee K, Pfeifer BA.

    J Theor Biol. 2010 Jan 21;262(2):197-207. Epub 2009 Oct 13.

    PMID:
    19833139
    [PubMed - indexed for MEDLINE]

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    20.

    Latent pathway activation and increased pathway capacity enable Escherichia coli adaptation to loss of key metabolic enzymes.

    Fong SS, Nanchen A, Palsson BO, Sauer U.

    J Biol Chem. 2006 Mar 24;281(12):8024-33. Epub 2005 Nov 30.

    PMID:
    16319065
    [PubMed - indexed for MEDLINE]
    Free Article

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