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    Results: 1 to 20 of 113

    1.

    EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data.

    Bock C, Halachev K, Büch J, Lengauer T.

    Genome Biol. 2009 Feb 10;10(2):R14.

    PMID:
    19208250
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Web-based analysis of (Epi-) genome data using EpiGRAPH and Galaxy.

    Bock C, Von Kuster G, Halachev K, Taylor J, Nekrutenko A, Lengauer T.

    Methods Mol Biol. 2010;628:275-96.

    PMID:
    20238087
    [PubMed - indexed for MEDLINE]
    3.

    The missing graphical user interface for genomics.

    Schatz MC.

    Genome Biol. 2010;11(8):128. Epub 2010 Aug 25.

    PMID:
    20804568
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

    Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

    BMC Bioinformatics. 2006 Nov 23;7:513.

    PMID:
    17123449
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    CAPweb: a bioinformatics CGH array Analysis Platform.

    Liva S, Hupé P, Neuvial P, Brito I, Viara E, La Rosa P, Barillot E.

    Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W477-81.

    PMID:
    16845053
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    IslandViewer: an integrated interface for computational identification and visualization of genomic islands.

    Langille MG, Brinkman FS.

    Bioinformatics. 2009 Mar 1;25(5):664-5. Epub 2009 Jan 16.

    PMID:
    19151094
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Bioinformatics software for biologists in the genomics era.

    Kumar S, Dudley J.

    Bioinformatics. 2007 Jul 15;23(14):1713-7. Epub 2007 May 7.

    PMID:
    17485425
    [PubMed - indexed for MEDLINE]
    Free Article
    8.

    The KLAB Toolbox: a suite of in-house software applications for epigenetic analysis.

    Naismith L, Lalancette C, Platts AE, Krawetz SA.

    Syst Biol Reprod Med. 2008 Mar-Apr;54(2):97-108.

    PMID:
    18446650
    [PubMed - indexed for MEDLINE]
    9.

    GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.

    Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z.

    BMC Bioinformatics. 2009 Feb 3;10:48.

    PMID:
    19192299
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays.

    Menten B, Pattyn F, De Preter K, Robbrecht P, Michels E, Buysse K, Mortier G, De Paepe A, van Vooren S, Vermeesch J, Moreau Y, De Moor B, Vermeulen S, Speleman F, Vandesompele J.

    BMC Bioinformatics. 2005 May 23;6:124.

    PMID:
    15910681
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    GeneTrail--advanced gene set enrichment analysis.

    Backes C, Keller A, Kuentzer J, Kneissl B, Comtesse N, Elnakady YA, Müller R, Meese E, Lenhof HP.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W186-92. Epub 2007 May 25.

    PMID:
    17526521
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser.

    Stenger JE, Xu H, Haynes C, Hauser ER, Pericak-Vance M, Goldschmidt-Clermont PJ, Vance JM.

    BMC Bioinformatics. 2005 Apr 12;6:95.

    PMID:
    15826305
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    The UCSC genome browser: what every molecular biologist should know.

    Mangan ME, Williams JM, Kuhn RM, Lathe WC 3rd.

    Curr Protoc Mol Biol. 2009 Oct;Chapter 19:Unit19.9. Review.

    PMID:
    19816931
    [PubMed - indexed for MEDLINE]
    14.

    Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison.

    Brown CT, Xie Y, Davidson EH, Cameron RA.

    BMC Bioinformatics. 2005 Mar 24;6:70.

    PMID:
    15790396
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Genome Environment Browser (GEB): a dynamic browser for visualising high-throughput experimental data in the context of genome features.

    Huntley D, Tang YA, Nesterova TB, Butcher S, Brockdorff N.

    BMC Bioinformatics. 2008 Nov 27;9:501.

    PMID:
    19038045
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    The MPI Bioinformatics Toolkit for protein sequence analysis.

    Biegert A, Mayer C, Remmert M, Söding J, Lupas AN.

    Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W335-9.

    PMID:
    16845021
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Ontological Discovery Environment: a system for integrating gene-phenotype associations.

    Baker EJ, Jay JJ, Philip VM, Zhang Y, Li Z, Kirova R, Langston MA, Chesler EJ.

    Genomics. 2009 Dec;94(6):377-87. Epub 2009 Sep 3.

    PMID:
    19733230
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    FlyPhy: a phylogenomic analysis platform for Drosophila genes and gene families.

    Wu J, Xu X, Xiao J, Xu L, Yi H, Gao S, Liu J, Bao Q, Zhao F, Li X.

    BMC Bioinformatics. 2009 Apr 25;10:123.

    PMID:
    19393099
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    GenColors: accelerated comparative analysis and annotation of prokaryotic genomes at various stages of completeness.

    Romualdi A, Siddiqui R, Glöckner G, Lehmann R, Sühnel J.

    Bioinformatics. 2005 Sep 15;21(18):3669-71. Epub 2005 Aug 2.

    PMID:
    16076887
    [PubMed - indexed for MEDLINE]
    Free Article
    20.

    DiProGB: the dinucleotide properties genome browser.

    Friedel M, Nikolajewa S, Sühnel J, Wilhelm T.

    Bioinformatics. 2009 Oct 1;25(19):2603-4. Epub 2009 Jul 15.

    PMID:
    19605418
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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