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    Results: 1 to 20 of 100

    1.

    Universal features in the genome-level evolution of protein domains.

    Cosentino Lagomarsino M, Sellerio AL, Heijning PD, Bassetti B.

    Genome Biol. 2009;10(1):R12. Epub 2009 Jan 30.

    PMID:
    19183449
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    The structure of the protein universe and genome evolution.

    Koonin EV, Wolf YI, Karev GP.

    Nature. 2002 Nov 14;420(6912):218-23. Review.

    PMID:
    12432406
    [PubMed - indexed for MEDLINE]
    3.

    Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model.

    Qian J, Luscombe NM, Gerstein M.

    J Mol Biol. 2001 Nov 2;313(4):673-81.

    PMID:
    11697896
    [PubMed - indexed for MEDLINE]
    4.

    Modeling protein network evolution under genome duplication and domain shuffling.

    Evlampiev K, Isambert H.

    BMC Syst Biol. 2007 Nov 13;1:49.

    PMID:
    17999763
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Mean-field methods in evolutionary duplication-innovation-loss models for the genome-level repertoire of protein domains.

    Angelini A, Amato A, Bianconi G, Bassetti B, Cosentino Lagomarsino M.

    Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Feb;81(2 Pt 1):021919. Epub 2010 Feb 22.

    PMID:
    20365607
    [PubMed - indexed for MEDLINE]
    6.

    Simple stochastic birth and death models of genome evolution: was there enough time for us to evolve?

    Karev GP, Wolf YI, Koonin EV.

    Bioinformatics. 2003 Oct 12;19(15):1889-900.

    PMID:
    14555621
    [PubMed - indexed for MEDLINE]
    Free Article
    7.

    The relationship between domain duplication and recombination.

    Vogel C, Teichmann SA, Pereira-Leal J.

    J Mol Biol. 2005 Feb 11;346(1):355-65. Epub 2004 Dec 23.

    PMID:
    15663950
    [PubMed - indexed for MEDLINE]
    8.

    Parameters of proteome evolution from histograms of amino-acid sequence identities of paralogous proteins.

    Axelsen JB, Yan KK, Maslov S.

    Biol Direct. 2007 Nov 26;2:32.

    PMID:
    18039386
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Conservation and topology of protein interaction networks under duplication-divergence evolution.

    Evlampiev K, Isambert H.

    Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):9863-8. Epub 2008 Jul 16.

    PMID:
    18632555
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome.

    Rzhetsky A, Gomez SM.

    Bioinformatics. 2001 Oct;17(10):988-96.

    PMID:
    11673244
    [PubMed - indexed for MEDLINE]
    Free Article
    11.

    The evolution of domain-content in bacterial genomes.

    Molina N, van Nimwegen E.

    Biol Direct. 2008 Dec 11;3:51.

    PMID:
    19077245
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Fold usage on genomes and protein fold evolution.

    Abeln S, Deane CM.

    Proteins. 2005 Sep 1;60(4):690-700.

    PMID:
    16001400
    [PubMed - indexed for MEDLINE]
    13.

    Protein families and their evolution-a structural perspective.

    Orengo CA, Thornton JM.

    Annu Rev Biochem. 2005;74:867-900. Review.

    PMID:
    15954844
    [PubMed - indexed for MEDLINE]
    14.

    The role of internal duplication in the evolution of multi-domain proteins.

    Nacher JC, Hayashida M, Akutsu T.

    Biosystems. 2010 Aug;101(2):127-35.

    PMID:
    20639124
    [PubMed - indexed for MEDLINE]
    15.

    Genomic and structural aspects of protein evolution.

    Chothia C, Gough J.

    Biochem J. 2009 Apr 1;419(1):15-28. Review.

    PMID:
    19272021
    [PubMed - indexed for MEDLINE]
    16.

    Final Report on Carcinogens Background Document for Formaldehyde.

    National Toxicology Program.

    Rep Carcinog Backgr Doc. 2010 Jan;(10-5981):i-512.

    PMID:
    20737003
    [PubMed - as supplied by publisher]
    17.

    A first-principles model of early evolution: emergence of gene families, species, and preferred protein folds.

    Zeldovich KB, Chen P, Shakhnovich BE, Shakhnovich EI.

    PLoS Comput Biol. 2007 Jul;3(7):e139.

    PMID:
    17630830
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Structural characterization of genomes by large scale sequence-structure threading: application of reliability analysis in structural genomics.

    Cherkasov A, Ho Sui SJ, Brunham RC, Jones SJ.

    BMC Bioinformatics. 2004 Jul 26;5:101.

    PMID:
    15274750
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

    Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

    Genome Biol. 2004;5(2):R7. Epub 2004 Jan 15.

    PMID:
    14759257
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Divergent evolution of a structural proteome: phenomenological models.

    Roland CB, Shakhnovich EI.

    Biophys J. 2007 Feb 1;92(3):701-16. Epub 2006 Oct 27.

    PMID:
    17071665
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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