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    Results: 1 to 20 of 118

    1.

    GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction.

    Browne F, Wang H, Zheng H, Azuaje F.

    Source Code Biol Med. 2009 Jan 26;4:2.PMID: 19171033 [PubMed - in process]Related articlesFree article

    2.

    SPIDer: Saccharomyces protein-protein interaction database.

    Wu X, Zhu L, Guo J, Fu C, Zhou H, Dong D, Li Z, Zhang DY, Lin K.

    BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S16.PMID: 17254300 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Genome-wide inference of protein interaction sites: lessons from the yeast high-quality negative protein-protein interaction dataset.

    Guo J, Wu X, Zhang DY, Lin K.

    Nucleic Acids Res. 2008 Apr;36(6):2002-11. Epub 2008 Feb 14.PMID: 18281313 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    STRING 8--a global view on proteins and their functional interactions in 630 organisms.

    Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, Muller J, Doerks T, Julien P, Roth A, Simonovic M, Bork P, von Mering C.

    Nucleic Acids Res. 2009 Jan;37(Database issue):D412-6. Epub 2008 Oct 21.PMID: 18940858 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    An assessment of the uses of homologous interactions.

    Saeed R, Deane C.

    Bioinformatics. 2008 Mar 1;24(5):689-95. Epub 2007 Nov 27.PMID: 18042554 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction.

    Jansen R, Gerstein M.

    Curr Opin Microbiol. 2004 Oct;7(5):535-45. Review.PMID: 15451510 [PubMed - indexed for MEDLINE]Related articles

    7.

    Bacteriome.org--an integrated protein interaction database for E. coli.

    Su C, Peregrin-Alvarez JM, Butland G, Phanse S, Fong V, Emili A, Parkinson J.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D632-6. Epub 2007 Oct 16.PMID: 17942431 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Mining protein networks for synthetic genetic interactions.

    Paladugu SR, Zhao S, Ray A, Raval A.

    BMC Bioinformatics. 2008 Oct 9;9:426.PMID: 18844977 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    PCI-SS: MISO dynamic nonlinear protein secondary structure prediction.

    Green JR, Korenberg MJ, Aboul-Magd MO.

    BMC Bioinformatics. 2009 Jul 17;10:222.PMID: 19615046 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Predicting protein-protein interactions from sequence using correlation coefficient and high-quality interaction dataset.

    Shi MG, Xia JF, Li XL, Huang DS.

    Amino Acids. 2009 Apr 24. [Epub ahead of print]PMID: 19387790 [PubMed - as supplied by publisher]Related articles

    11.

    GEM-TREND: a web tool for gene expression data mining toward relevant network discovery.

    Feng C, Araki M, Kunimoto R, Tamon A, Makiguchi H, Niijima S, Tsujimoto G, Okuno Y.

    BMC Genomics. 2009 Sep 3;10:411.PMID: 19728865 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Prediction of yeast protein-protein interaction network: insights from the Gene Ontology and annotations.

    Wu X, Zhu L, Guo J, Zhang DY, Lin K.

    Nucleic Acids Res. 2006 Apr 26;34(7):2137-50. Print 2006.PMID: 16641319 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Large-scale structural modeling of protein complexes at low resolution.

    Zhu Z, Tovchigrechko A, Baronova T, Gao Y, Douguet D, O'Toole N, Vakser IA.

    J Bioinform Comput Biol. 2008 Aug;6(4):789-810.PMID: 18763743 [PubMed - indexed for MEDLINE]Related articles

    14.

    A mouse protein interactome through combined literature mining with multiple sources of interaction evidence.

    Li X, Cai H, Xu J, Ying S, Zhang Y.

    Amino Acids. 2009 Aug 8. [Epub ahead of print]PMID: 19669079 [PubMed - as supplied by publisher]Related articles

    15.

    HAPPI: an online database of comprehensive human annotated and predicted protein interactions.

    Chen JY, Mamidipalli S, Huan T.

    BMC Genomics. 2009 Jul 7;10 Suppl 1:S16.PMID: 19594875 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Up-to-date catalogues of yeast protein complexes.

    Pu S, Wong J, Turner B, Cho E, Wodak SJ.

    Nucleic Acids Res. 2009 Feb;37(3):825-31. Epub 2008 Dec 18.PMID: 19095691 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    PIPs: human protein-protein interaction prediction database.

    McDowall MD, Scott MS, Barton GJ.

    Nucleic Acids Res. 2009 Jan;37(Database issue):D651-6. Epub 2008 Nov 6.PMID: 18988626 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    7TMRmine: a Web server for hierarchical mining of 7TMR proteins.

    Lu G, Wang Z, Jones AM, Moriyama EN.

    BMC Genomics. 2009 Jun 19;10:275.PMID: 19538753 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    A chemogenomics view on protein-ligand spaces.

    Strömbergsson H, Kleywegt GJ.

    BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S13.PMID: 19534738 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Assessing reliability of protein-protein interactions by integrative analysis of data in model organisms.

    Lin X, Liu M, Chen XW.

    BMC Bioinformatics. 2009 Apr 29;10 Suppl 4:S5.PMID: 19426453 [PubMed - indexed for MEDLINE]Related articlesFree article

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