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    Results: 1 to 20 of 157

    1.

    EPIC-DB: a proteomics database for studying Apicomplexan organisms.

    Madrid-Aliste CJ, Dybas JM, Angeletti RH, Weiss LM, Kim K, Simon I, Fiser A.

    BMC Genomics. 2009 Jan 21;10:38.PMID: 19159464 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation.

    Xia D, Sanderson SJ, Jones AR, Prieto JH, Yates JR, Bromley E, Tomley FM, Lal K, Sinden RE, Brunk BP, Roos DS, Wastling JM.

    Genome Biol. 2008;9(7):R116. Epub 2008 Jul 21.PMID: 18644147 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

    Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

    BMC Bioinformatics. 2006 Oct 17;7:459.PMID: 17044936 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Characterisation of global protein expression by two-dimensional electrophoresis and mass spectrometry: proteomics of Toxoplasma gondii.

    Cohen AM, Rumpel K, Coombs GH, Wastling JM.

    Int J Parasitol. 2002 Jan;32(1):39-51.PMID: 11796121 [PubMed - indexed for MEDLINE]Related articles

    5.

    Computational analysis and experimental validation of gene predictions in Toxoplasma gondii.

    Dybas JM, Madrid-Aliste CJ, Che FY, Nieves E, Rykunov D, Angeletti RH, Weiss LM, Kim K, Fiser A.

    PLoS One. 2008;3(12):e3899. Epub 2008 Dec 9.PMID: 19065262 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    ORFer--retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files.

    Büssow K, Hoffmann S, Sievert V.

    BMC Bioinformatics. 2002 Dec 19;3:40. Epub 2002 Dec 19.PMID: 12493080 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes.

    Fleming K, Müller A, MacCallum RM, Sternberg MJ.

    Nucleic Acids Res. 2004 Jan 1;32(Database issue):D245-50.PMID: 14681404 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics.

    Fermin D, Allen BB, Blackwell TW, Menon R, Adamski M, Xu Y, Ulintz P, Omenn GS, States DJ.

    Genome Biol. 2006;7(4):R35. Epub 2006 Apr 28.PMID: 16646984 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites.

    Li L, Crabtree J, Fischer S, Pinney D, Stoeckert CJ Jr, Sibley LD, Roos DS.

    Nucleic Acids Res. 2004 Jan 1;32(Database issue):D326-8.PMID: 14681425 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    ProteomeWeb: a web-based interface for the display and interrogation of proteomes.

    Babnigg G, Giometti CS.

    Proteomics. 2003 May;3(5):584-600.PMID: 12748939 [PubMed - indexed for MEDLINE]Related articles

    12.

    ToxoDB: an integrated Toxoplasma gondii database resource.

    Gajria B, Bahl A, Brestelli J, Dommer J, Fischer S, Gao X, Heiges M, Iodice J, Kissinger JC, Mackey AJ, Pinney DF, Roos DS, Stoeckert CJ Jr, Wang H, Brunk BP.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D553-6. Epub 2007 Nov 14.PMID: 18003657 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

    Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

    BMC Bioinformatics. 2007 Apr 19;8:129.PMID: 17445272 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Version VI of the ESTree db: an improved tool for peach transcriptome analysis.

    Lazzari B, Caprera A, Vecchietti A, Merelli I, Barale F, Milanesi L, Stella A, Pozzi C.

    BMC Bioinformatics. 2008 Mar 26;9 Suppl 2:S9.PMID: 18387211 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    SjTPdb: integrated transcriptome and proteome database and analysis platform for Schistosoma japonicum.

    Liu F, Chen P, Cui SJ, Wang ZQ, Han ZG.

    BMC Genomics. 2008 Jun 26;9:304.PMID: 18578888 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Efficiency improvement of peptide identification for an organism without complete genome sequence, using expressed sequence tag database and tandem mass spectral data.

    Kwon KH, Kim M, Kim JY, Kim KW, Kim SI, Park YM, Yoo JS.

    Proteomics. 2003 Dec;3(12):2305-9.PMID: 14673780 [PubMed - indexed for MEDLINE]Related articles

    17.

    The UCSC Genome Browser Database: update 2006.

    Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, Diekhans M, Furey TS, Harte RA, Hsu F, Hillman-Jackson J, Kuhn RM, Pedersen JS, Pohl A, Raney BJ, Rosenbloom KR, Siepel A, Smith KE, Sugnet CW, Sultan-Qurraie A, Thomas DJ, Trumbower H, Weber RJ, Weirauch M, Zweig AS, Haussler D, Kent WJ.

    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D590-8.PMID: 16381938 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    CryptoDB: a Cryptosporidium bioinformatics resource update.

    Heiges M, Wang H, Robinson E, Aurrecoechea C, Gao X, Kaluskar N, Rhodes P, Wang S, He CZ, Su Y, Miller J, Kraemer E, Kissinger JC.

    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D419-22.PMID: 16381902 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments.

    Allmer J, Kuhlgert S, Hippler M.

    BMC Bioinformatics. 2008 Jul 7;9:302.PMID: 18605993 [PubMed - indexed for MEDLINE]Related articlesFree article

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