PubMed

CHSMiner: a GUI tool to identify chromosomal homologous segments.

Wang Z, Ding G, Yu Z, Liu L, Li Y.

Algorithms Mol Biol. 2009 Jan 15;4:2.PMID: 19146671 [PubMed]Free PMC ArticleFree textRelated citations

SyntenyTracker: a tool for defining homologous synteny blocks using radiation hybrid maps and whole-genome sequence.

Donthu R, Lewin HA, Larkin DM.

BMC Res Notes. 2009 Jul 23;2:148.PMID: 19627596 [PubMed]Free PMC ArticleFree textRelated citations

PanGEA: identification of allele specific gene expression using the 454 technology.

Kofler R, Teixeira Torres T, Lelley T, Schlötterer C.

BMC Bioinformatics. 2009 May 14;10:143.PMID: 19442283 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context.

Martin O, Valsesia A, Telenti A, Xenarios I, Stevenson BJ.

Bioinformatics. 2009 Mar 1;25(5):662-3. Epub 2009 Jan 25.PMID: 19168913 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

RGG: a general GUI Framework for R scripts.

Visne I, Dilaveroglu E, Vierlinger K, Lauss M, Yildiz A, Weinhaeusel A, Noehammer C, Leisch F, Kriegner A.

BMC Bioinformatics. 2009 Mar 2;10:74.PMID: 19254356 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

MarVis: a tool for clustering and visualization of metabolic biomarkers.

Kaever A, Lingner T, Feussner K, Göbel C, Feussner I, Meinicke P.

BMC Bioinformatics. 2009 Mar 20;10:92.PMID: 19302701 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.

Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z.

BMC Bioinformatics. 2009 Feb 3;10:48.PMID: 19192299 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

EDGAR: a software framework for the comparative analysis of prokaryotic genomes.

Blom J, Albaum SP, Doppmeier D, Pühler A, Vorhölter FJ, Zakrzewski M, Goesmann A.

BMC Bioinformatics. 2009 May 20;10:154.PMID: 19457249 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

FORG3D: force-directed 3D graph editor for visualization of integrated genome scale data.

Paananen J, Wong G.

BMC Syst Biol. 2009 Feb 24;3:26.PMID: 19239683 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

A web-based software system for dynamic gene cluster comparison across multiple genomes.

Revanna KV, Krishnakumar V, Dong Q.

Bioinformatics. 2009 Apr 1;25(7):956-7. Epub 2009 Feb 9.PMID: 19208612 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

Gecko and GhostFam: rigorous and efficient gene cluster detection in prokaryotic genomes.

Schmidt T, Stoye J.

Methods Mol Biol. 2007;396:165-82.PMID: 18025693 [PubMed - indexed for MEDLINE]Related citations

Automics: an integrated platform for NMR-based metabonomics spectral processing and data analysis.

Wang T, Shao K, Chu Q, Ren Y, Mu Y, Qu L, He J, Jin C, Xia B.

BMC Bioinformatics. 2009 Mar 16;10:83.PMID: 19291281 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

CodonExplorer: an interactive online database for the analysis of codon usage and sequence composition.

Zaneveld J, Hamady M, Sueoka N, Knight R.

Methods Mol Biol. 2009;537:207-32.PMID: 19378146 [PubMed - indexed for MEDLINE]Related citations

OrthoSelect: a protocol for selecting orthologous groups in phylogenomics.

Schreiber F, Pick K, Erpenbeck D, Wörheide G, Morgenstern B.

BMC Bioinformatics. 2009 Jul 16;10:219.PMID: 19607672 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Computational identification of protein-coding sequences by comparative analysis.

Fontaine A, Touzet H.

Int J Data Min Bioinform. 2009;3(2):160-76.PMID: 19517987 [PubMed - indexed for MEDLINE]Related citations

Gene composer: database software for protein construct design, codon engineering, and gene synthesis.

Lorimer D, Raymond A, Walchli J, Mixon M, Barrow A, Wallace E, Grice R, Burgin A, Stewart L.

BMC Biotechnol. 2009 Apr 21;9:36.PMID: 19383142 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

GEM-TREND: a web tool for gene expression data mining toward relevant network discovery.

Feng C, Araki M, Kunimoto R, Tamon A, Makiguchi H, Niijima S, Tsujimoto G, Okuno Y.

BMC Genomics. 2009 Sep 3;10:411.PMID: 19728865 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

PDB Editor: a user-friendly Java-based Protein Data Bank file editor with a GUI.

Lee J, Kim SH.

Acta Crystallogr D Biol Crystallogr. 2009 Apr;65(Pt 4):399-402. Epub 2009 Mar 19.PMID: 19307724 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

IslandViewer: an integrated interface for computational identification and visualization of genomic islands.

Langille MG, Brinkman FS.

Bioinformatics. 2009 Mar 1;25(5):664-5. Epub 2009 Jan 16.PMID: 19151094 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

A cluster-aware graphical user interface for a virtual ligand screening tool.

Ramjan ZH, Raheja A, Floriano WB.

Conf Proc IEEE Eng Med Biol Soc. 2008;2008:4102-5.PMID: 19163614 [PubMed - indexed for MEDLINE]Related citations