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    Results: 1 to 20 of 93

    1.

    Diatom genomes come of age.

    Vardi A, Thamatrakoln K, Bidle KD, Falkowski PG.

    Genome Biol. 2008;9(12):245. Review. Erratum in: Genome Biol. 2010;11(6):401.

    PMID:
    19144209
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Potential impact of stress activated retrotransposons on genome evolution in a marine diatom.

    Maumus F, Allen AE, Mhiri C, Hu H, Jabbari K, Vardi A, Grandbastien MA, Bowler C.

    BMC Genomics. 2009 Dec 22;10:624.

    PMID:
    20028555
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Genome size differentiates co-occurring populations of the planktonic diatom Ditylum brightwellii (Bacillariophyta).

    Koester JA, Swalwell JE, von Dassow P, Armbrust EV.

    BMC Evol Biol. 2010 Jan 2;10:1.

    PMID:
    20044934
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    The Phaeodactylum genome reveals the evolutionary history of diatom genomes.

    Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde M, Katinka M, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret JP, Chiovitti A, Choi CJ, Coesel S, De Martino A, Detter JC, Durkin C, Falciatore A, Fournet J, Haruta M, Huysman MJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kröger N, Kroth PG, La Roche J, Lindquist E, Lommer M, Martin-Jézéquel V, Lopez PJ, Lucas S, Mangogna M, McGinnis K, Medlin LK, Montsant A, Oudot-Le Secq MP, Napoli C, Obornik M, Parker MS, Petit JL, Porcel BM, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H, Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A, Wyrwicz LS, Rokhsar DS, Weissenbach J, Armbrust EV, Green BR, Van de Peer Y, Grigoriev IV.

    Nature. 2008 Nov 13;456(7219):239-44. Epub 2008 Oct 15.

    PMID:
    18923393
    [PubMed - indexed for MEDLINE]
    5.

    Oceanographic and biogeochemical insights from diatom genomes.

    Bowler C, Vardi A, Allen AE.

    Ann Rev Mar Sci. 2010;2:333-65. Review.

    PMID:
    21141668
    [PubMed - indexed for MEDLINE]
    6.

    Genetic transformation: a tool to study protein targeting in diatoms.

    Kroth PG.

    Methods Mol Biol. 2007;390:257-67.

    PMID:
    17951693
    [PubMed - indexed for MEDLINE]
    7.

    Genomic footprints of a cryptic plastid endosymbiosis in diatoms.

    Moustafa A, Beszteri B, Maier UG, Bowler C, Valentin K, Bhattacharya D.

    Science. 2009 Jun 26;324(5935):1724-6.

    PMID:
    19556510
    [PubMed - indexed for MEDLINE]
    8.

    Chloroplast genome sequencing analysis of Heterosigma akashiwo CCMP452 (West Atlantic) and NIES293 (West Pacific) strains.

    Cattolico RA, Jacobs MA, Zhou Y, Chang J, Duplessis M, Lybrand T, McKay J, Ong HC, Sims E, Rocap G.

    BMC Genomics. 2008 May 8;9:211.

    PMID:
    18462506
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism.

    Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, Zhou S, Allen AE, Apt KE, Bechner M, Brzezinski MA, Chaal BK, Chiovitti A, Davis AK, Demarest MS, Detter JC, Glavina T, Goodstein D, Hadi MZ, Hellsten U, Hildebrand M, Jenkins BD, Jurka J, Kapitonov VV, Kröger N, Lau WW, Lane TW, Larimer FW, Lippmeier JC, Lucas S, Medina M, Montsant A, Obornik M, Parker MS, Palenik B, Pazour GJ, Richardson PM, Rynearson TA, Saito MA, Schwartz DC, Thamatrakoln K, Valentin K, Vardi A, Wilkerson FP, Rokhsar DS.

    Science. 2004 Oct 1;306(5693):79-86.

    PMID:
    15459382
    [PubMed - indexed for MEDLINE]
    10.

    Complete sequence of the mitochondrial genome of a diatom alga Synedra acus and comparative analysis of diatom mitochondrial genomes.

    Ravin NV, Galachyants YP, Mardanov AV, Beletsky AV, Petrova DP, Sherbakova TA, Zakharova YR, Likhoshway YV, Skryabin KG, Grachev MA.

    Curr Genet. 2010 Jun;56(3):215-23. Epub 2010 Mar 23.

    PMID:
    20309551
    [PubMed - indexed for MEDLINE]
    11.

    Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage.

    Oudot-Le Secq MP, Grimwood J, Shapiro H, Armbrust EV, Bowler C, Green BR.

    Mol Genet Genomics. 2007 Apr;277(4):427-39. Epub 2007 Jan 25.

    PMID:
    17252281
    [PubMed - indexed for MEDLINE]
    12.

    Molecular systematics and the diatom species.

    Alverson AJ.

    Protist. 2008 Jul;159(3):339-53. Epub 2008 Jun 9. No abstract available.

    PMID:
    18539524
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Quantification of diatom and dinoflagellate biomasses in coastal marine seawater samples by real-time PCR.

    Godhe A, Asplund ME, Härnström K, Saravanan V, Tyagi A, Karunasagar I.

    Appl Environ Microbiol. 2008 Dec;74(23):7174-82. Epub 2008 Oct 10.

    PMID:
    18849462
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Diatom genomics: genetic acquisitions and mergers.

    Nisbet RE, Kilian O, McFadden GI.

    Curr Biol. 2004 Dec 29;14(24):R1048-50. Review.

    PMID:
    15620637
    [PubMed - indexed for MEDLINE]
    15.

    Microbiology. Seeing green and red in diatom genomes.

    Dagan T, Martin W.

    Science. 2009 Jun 26;324(5935):1651-2. No abstract available.

    PMID:
    19556490
    [PubMed - indexed for MEDLINE]
    16.

    Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis.

    Tyler BM, Tripathy S, Zhang X, Dehal P, Jiang RH, Aerts A, Arredondo FD, Baxter L, Bensasson D, Beynon JL, Chapman J, Damasceno CM, Dorrance AE, Dou D, Dickerman AW, Dubchak IL, Garbelotto M, Gijzen M, Gordon SG, Govers F, Grunwald NJ, Huang W, Ivors KL, Jones RW, Kamoun S, Krampis K, Lamour KH, Lee MK, McDonald WH, Medina M, Meijer HJ, Nordberg EK, Maclean DJ, Ospina-Giraldo MD, Morris PF, Phuntumart V, Putnam NH, Rash S, Rose JK, Sakihama Y, Salamov AA, Savidor A, Scheuring CF, Smith BM, Sobral BW, Terry A, Torto-Alalibo TA, Win J, Xu Z, Zhang H, Grigoriev IV, Rokhsar DS, Boore JL.

    Science. 2006 Sep 1;313(5791):1261-6.

    PMID:
    16946064
    [PubMed - indexed for MEDLINE]
    17.

    In the grip of algal genomics.

    Grossman AR.

    Adv Exp Med Biol. 2007;616:54-76. Review.

    PMID:
    18161491
    [PubMed - indexed for MEDLINE]
    19.

    Bridging the Rubicon: phylogenetic analysis reveals repeated colonizations of marine and fresh waters by thalassiosiroid diatoms.

    Alverson AJ, Jansen RK, Theriot EC.

    Mol Phylogenet Evol. 2007 Oct;45(1):193-210. Epub 2007 Apr 22.

    PMID:
    17553708
    [PubMed - indexed for MEDLINE]
    20.

    Evolutionary origins and functions of the carotenoid biosynthetic pathway in marine diatoms.

    Coesel S, Oborník M, Varela J, Falciatore A, Bowler C.

    PLoS One. 2008 Aug 6;3(8):e2896.

    PMID:
    18682837
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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