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    Results: 1 to 20 of 112

    1.

    Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes.

    Balasubramanian S, Zheng D, Liu YJ, Fang G, Frankish A, Carriero N, Robilotto R, Cayting P, Gerstein M.

    Genome Biol. 2009;10(1):R2. Epub 2009 Jan 5.

    PMID:
    19123937
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Assessing the genomic evidence for conserved transcribed pseudogenes under selection.

    Khachane AN, Harrison PM.

    BMC Genomics. 2009 Sep 15;10:435.

    PMID:
    19754956
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity.

    Liu YJ, Zheng D, Balasubramanian S, Carriero N, Khurana E, Robilotto R, Gerstein MB.

    BMC Genomics. 2009 Oct 16;10:480.

    PMID:
    19835609
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Genome-wide survey for biologically functional pseudogenes.

    Svensson O, Arvestad L, Lagergren J.

    PLoS Comput Biol. 2006 May;2(5):e46. Epub 2006 May 5.

    PMID:
    16680195
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability.

    Harrison PM, Zheng D, Zhang Z, Carriero N, Gerstein M.

    Nucleic Acids Res. 2005 Apr 28;33(8):2374-83. Print 2005.

    PMID:
    15860774
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Evolution of the NANOG pseudogene family in the human and chimpanzee genomes.

    Fairbanks DJ, Maughan PJ.

    BMC Evol Biol. 2006 Feb 9;6:12.

    PMID:
    16469101
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Analysis of the role of retrotransposition in gene evolution in vertebrates.

    Yu Z, Morais D, Ivanga M, Harrison PM.

    BMC Bioinformatics. 2007 Aug 24;8:308.

    PMID:
    17718914
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome.

    Zhang Z, Gerstein M.

    Genomics. 2003 May;81(5):468-80.

    PMID:
    12706105
    [PubMed - indexed for MEDLINE]
    9.

    Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome.

    Zhang Z, Harrison P, Gerstein M.

    Genome Res. 2002 Oct;12(10):1466-82.

    PMID:
    12368239
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Frequent emergence and functional resurrection of processed pseudogenes in the human and mouse genomes.

    Sakai H, Koyanagi KO, Imanishi T, Itoh T, Gojobori T.

    Gene. 2007 Mar 15;389(2):196-203. Epub 2006 Nov 18.

    PMID:
    17196768
    [PubMed - indexed for MEDLINE]
    11.

    Integrated pseudogene annotation for human chromosome 22: evidence for transcription.

    Zheng D, Zhang Z, Harrison PM, Karro J, Carriero N, Gerstein M.

    J Mol Biol. 2005 May 27;349(1):27-45. Epub 2005 Apr 2.

    PMID:
    15876366
    [PubMed - indexed for MEDLINE]
    12.

    Genomic organization of eukaryotic tRNAs.

    Bermudez-Santana C, Attolini CS, Kirsten T, Engelhardt J, Prohaska SJ, Steigele S, Stadler PF.

    BMC Genomics. 2010 Apr 28;11:270.

    PMID:
    20426822
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    HOPPSIGEN: a database of human and mouse processed pseudogenes.

    Khelifi A, Duret L, Mouchiroud D.

    Nucleic Acids Res. 2005 Jan 1;33(Database issue):D59-66. Erratum in: Nucleic Acids Res. 2005;33(1):448. Adel, Khelifi [corrected to Khelifi, Adel]; Laurent, Duret [corrected to Durent, Laurent]; Dominique, Mouchiroud [corrected to Mouchiroud, Dominique].

    PMID:
    15608268
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Comparative analysis of the paired immunoglobulin-like receptor (PILR) locus in six mammalian genomes: duplication, conversion, and the birth of new genes.

    Wilson MD, Cheung J, Martindale DW, Scherer SW, Koop BF.

    Physiol Genomics. 2006 Nov 27;27(3):201-18. Epub 2006 Aug 22.

    PMID:
    16926269
    [PubMed - indexed for MEDLINE]
    Free Article
    15.

    L1 elements, processed pseudogenes and retrogenes in mammalian genomes.

    Ding W, Lin L, Chen B, Dai J.

    IUBMB Life. 2006 Dec;58(12):677-85. Review.

    PMID:
    17424906
    [PubMed - indexed for MEDLINE]
    16.

    Divergent V1R repertoires in five species: Amplification in rodents, decimation in primates, and a surprisingly small repertoire in dogs.

    Young JM, Kambere M, Trask BJ, Lane RP.

    Genome Res. 2005 Feb;15(2):231-40. Epub 2005 Jan 14. Erratum in: Genome Res. 2005 Apr;15(4):601.

    PMID:
    15653832
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    The mammalian genome contains a high proportion of processed pseudogenes corresponding to ribosomal protein L19.

    Shiran A, Flusser G, Aloni R, Meyuhas O.

    Biochem Int. 1990 Dec;22(5):921-8.

    PMID:
    2099152
    [PubMed - indexed for MEDLINE]
    19.

    Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22.

    Harrison PM, Hegyi H, Balasubramanian S, Luscombe NM, Bertone P, Echols N, Johnson T, Gerstein M.

    Genome Res. 2002 Feb;12(2):272-80.

    PMID:
    11827946
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Analysis of nuclear receptor pseudogenes in vertebrates: how the silent tell their stories.

    Zhang ZD, Cayting P, Weinstock G, Gerstein M.

    Mol Biol Evol. 2008 Jan;25(1):131-43. Epub 2007 Dec 7.

    PMID:
    18065488
    [PubMed - indexed for MEDLINE]
    Free Article

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