PubMed

HuMiTar: a sequence-based method for prediction of human microRNA targets.

Ruan J, Chen H, Kurgan L, Chen K, Kang C, Pu P.

Algorithms Mol Biol. 2008 Dec 22;3:16.PMID: 19102780 [PubMed]Related articlesFree article

MiRTif: a support vector machine-based microRNA target interaction filter.

Yang Y, Wang YP, Li KB.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S4.PMID: 19091027 [PubMed - indexed for MEDLINE]Related articlesFree article

Combinatorial microRNA target predictions.

Krek A, Grün D, Poy MN, Wolf R, Rosenberg L, Epstein EJ, MacMenamin P, da Piedade I, Gunsalus KC, Stoffel M, Rajewsky N.

Nat Genet. 2005 May;37(5):495-500. Epub 2005 Apr 3.PMID: 15806104 [PubMed - indexed for MEDLINE]Related articles

Naïve Bayes for microRNA target predictions--machine learning for microRNA targets.

Yousef M, Jung S, Kossenkov AV, Showe LC, Showe MK.

Bioinformatics. 2007 Nov 15;23(22):2987-92. Epub 2007 Oct 8.PMID: 17925304 [PubMed - indexed for MEDLINE]Related articlesFree article

TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples.

Bandyopadhyay S, Mitra R.

Bioinformatics. 2009 Oct 15;25(20):2625-31. Epub 2009 Aug 19.PMID: 19692556 [PubMed - indexed for MEDLINE]Related articles

microRNA target predictions across seven Drosophila species and comparison to mammalian targets.

Grün D, Wang YL, Langenberger D, Gunsalus KC, Rajewsky N.

PLoS Comput Biol. 2005 Jun;1(1):e13. Epub 2005 Jun 24.PMID: 16103902 [PubMed]Related articlesFree article

Most mammalian mRNAs are conserved targets of microRNAs.

Friedman RC, Farh KK, Burge CB, Bartel DP.

Genome Res. 2009 Jan;19(1):92-105. Epub 2008 Oct 27.PMID: 18955434 [PubMed - indexed for MEDLINE]Related articlesFree article

Accurate microRNA target prediction correlates with protein repression levels.

Maragkakis M, Alexiou P, Papadopoulos GL, Reczko M, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Simossis VA, Sethupathy P, Vergoulis T, Koziris N, Sellis T, Tsanakas P, Hatzigeorgiou AG.

BMC Bioinformatics. 2009 Sep 18;10:295.PMID: 19765283 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information.

Joung JG, Fei Z.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S34.PMID: 19208135 [PubMed - indexed for MEDLINE]Related articlesFree article

Integrative molecular bioinformatics study of human adrenocortical tumors: microRNA, tissue-specific target prediction, and pathway analysis.

Tömböl Z, Szabó PM, Molnár V, Wiener Z, Tölgyesi G, Horányi J, Riesz P, Reismann P, Patócs A, Likó I, Gaillard RC, Falus A, Rácz K, Igaz P.

Endocr Relat Cancer. 2009 Sep;16(3):895-906. Epub 2009 Jun 22.PMID: 19546168 [PubMed - indexed for MEDLINE]Related articles

A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions.

Creighton CJ, Nagaraja AK, Hanash SM, Matzuk MM, Gunaratne PH.

RNA. 2008 Nov;14(11):2290-6. Epub 2008 Sep 23.PMID: 18812437 [PubMed - indexed for MEDLINE]Related articlesFree article

Transcriptome-wide prediction of miRNA targets in human and mouse using FASTH.

Ragan C, Cloonan N, Grimmond SM, Zuker M, Ragan MA.

PLoS One. 2009 May 29;4(5):e5745. Erratum in: PLoS One. 2009;4(7). doi: 10.1371/annotation/e0842765-3cae-4737-8b5b-96aeb12d7fb5. PMID: 19478946 [PubMed - indexed for MEDLINE]Related articlesFree article

Target identification of microRNAs expressed highly in human embryonic stem cells.

Li SS, Yu SL, Kao LP, Tsai ZY, Singh S, Chen BZ, Ho BC, Liu YH, Yang PC.

J Cell Biochem. 2009 Apr 15;106(6):1020-30.PMID: 19229866 [PubMed - indexed for MEDLINE]Related articles

MicroRNA expression in response to murine myocardial infarction: miR-21 regulates fibroblast metalloprotease-2 via phosphatase and tensin homologue.

Roy S, Khanna S, Hussain SR, Biswas S, Azad A, Rink C, Gnyawali S, Shilo S, Nuovo GJ, Sen CK.

Cardiovasc Res. 2009 Apr 1;82(1):21-9. Epub 2009 Jan 15.PMID: 19147652 [PubMed - indexed for MEDLINE]Related articles

Dispatched Homolog 2 is targeted by miR-214 through a combination of three weak microRNA recognition sites.

Li N, Flynt AS, Kim HR, Solnica-Krezel L, Patton JG.

Nucleic Acids Res. 2008 Aug;36(13):4277-85. Epub 2008 Jun 26.PMID: 18583362 [PubMed - indexed for MEDLINE]Related articlesFree article

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions.

Busch A, Richter AS, Backofen R.

Bioinformatics. 2008 Dec 15;24(24):2849-56. Epub 2008 Oct 21.PMID: 18940824 [PubMed - indexed for MEDLINE]Related articlesFree article

Systematic validation of predicted microRNAs for cyclin D1.

Jiang Q, Feng MG, Mo YY.

BMC Cancer. 2009 Jun 18;9:194.PMID: 19538740 [PubMed - indexed for MEDLINE]Related articlesFree article

MicroRNA-143 targets DNA methyltransferases 3A in colorectal cancer.

Ng EK, Tsang WP, Ng SS, Jin HC, Yu J, Li JJ, Röcken C, Ebert MP, Kwok TT, Sung JJ.

Br J Cancer. 2009 Aug 18;101(4):699-706. Epub 2009 Jul 28.PMID: 19638978 [PubMed - indexed for MEDLINE]Related articles

IkappaBzeta expression is regulated by miR-124a.

Lindenblatt C, Schulze-Osthoff K, Totzke G.

Cell Cycle. 2009 Jul 1;8(13):2019-23. Epub 2009 Jul 21.PMID: 19502795 [PubMed - indexed for MEDLINE]Related articles

Seed-based systematic discovery of specific transcription factor target genes.

Mrowka R, Blüthgen N, Fähling M.

FEBS J. 2008 Jun;275(12):3178-92. Epub 2008 May 13.PMID: 18485006 [PubMed - indexed for MEDLINE]Related articles