PubMed

Automated paleontology of repetitive DNA with REANNOTATE.

Pereira V.

BMC Genomics. 2008 Dec 18;9:614.PMID: 19094224 [PubMed - indexed for MEDLINE]Related articlesFree article

Repeated DNA of the human Y chromosome.

Smith KD, Young KE, Talbot CC Jr, Schmeckpeper BJ.

Development. 1987;101 Suppl:77-92.PMID: 2846258 [PubMed - indexed for MEDLINE]Related articles

[Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes]

Zhang DL, Ji L, Li YD.

Yi Chuan Xue Bao. 2004 May;31(5):431-43. Chinese. PMID: 15478601 [PubMed - indexed for MEDLINE]Related articles

Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species.

Lorenzi H, Thiagarajan M, Haas B, Wortman J, Hall N, Caler E.

BMC Genomics. 2008 Dec 10;9:595.PMID: 19077187 [PubMed - indexed for MEDLINE]Related articlesFree article

TEnest: automated chronological annotation and visualization of nested plant transposable elements.

Kronmiller BA, Wise RP.

Plant Physiol. 2008 Jan;146(1):45-59. Epub 2007 Nov 21.PMID: 18032588 [PubMed - indexed for MEDLINE]Related articlesFree article

Repetitive DNA and chromosome evolution in plants.

Flavell RB.

Philos Trans R Soc Lond B Biol Sci. 1986 Jan 29;312(1154):227-42.PMID: 2870519 [PubMed - indexed for MEDLINE]Related articles

Transposable element annotation of the rice genome.

Juretic N, Bureau TE, Bruskiewich RM.

Bioinformatics. 2004 Jan 22;20(2):155-60.PMID: 14734305 [PubMed - indexed for MEDLINE]Related articlesFree article

Using RepeatMasker to identify repetitive elements in genomic sequences.

Tarailo-Graovac M, Chen N.

Curr Protoc Bioinformatics. 2009 Mar;Chapter 4:Unit 4.10.PMID: 19274634 [PubMed - indexed for MEDLINE]Related articles

Characterization of a novel class of interspersed LTR elements in primate genomes: structure, genomic distribution, and evolution.

Liao D, Pavelitz T, Weiner AM.

J Mol Evol. 1998 Jun;46(6):649-60.PMID: 9608047 [PubMed - indexed for MEDLINE]Related articles

Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton.

Zhao XP, Si Y, Hanson RE, Crane CF, Price HJ, Stelly DM, Wendel JF, Paterson AH.

Genome Res. 1998 May;8(5):479-92. Erratum in: Genome Res 1998 Jun;8(6):682. PMID: 9582192 [PubMed - indexed for MEDLINE]Related articlesFree article

Repbase Update, a database of eukaryotic repetitive elements.

Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J.

Cytogenet Genome Res. 2005;110(1-4):462-7. Review.PMID: 16093699 [PubMed - indexed for MEDLINE]Related articles

Combined evidence annotation of transposable elements in genome sequences.

Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D.

PLoS Comput Biol. 2005 Jul;1(2):166-75. Epub 2005 Jul 29.PMID: 16110336 [PubMed]Related articlesFree article

Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes.

Cermak T, Kubat Z, Hobza R, Koblizkova A, Widmer A, Macas J, Vyskot B, Kejnovsky E.

Chromosome Res. 2008;16(7):961-76. Epub 2008 Oct 15.PMID: 18853265 [PubMed - indexed for MEDLINE]Related articles

Genome canalization: the coevolution of transposable and interspersed repetitive elements with single copy DNA.

von Sternberg RM, Novick GE, Gao GP, Herrera RJ.

Genetica. 1992;86(1-3):215-46. Review.PMID: 1334910 [PubMed - indexed for MEDLINE]Related articles

The role of repetitive DNA in structure and evolution of sex chromosomes in plants.

Kejnovsky E, Hobza R, Cermak T, Kubat Z, Vyskot B.

Heredity. 2009 Jun;102(6):533-41. Epub 2009 Mar 11. Review.PMID: 19277056 [PubMed - indexed for MEDLINE]Related articles

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor.

Kohany O, Gentles AJ, Hankus L, Jurka J.

BMC Bioinformatics. 2006 Oct 25;7:474.PMID: 17064419 [PubMed - indexed for MEDLINE]Related articlesFree article

Densities, length proportions, and other distributional features of repetitive sequences in the human genome estimated from 430 megabases of genomic sequence.

Gu Z, Wang H, Nekrutenko A, Li WH.

Gene. 2000 Dec 23;259(1-2):81-8.PMID: 11163965 [PubMed - indexed for MEDLINE]Related articles

Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA.

Polavarapu N, Mariño-Ramírez L, Landsman D, McDonald JF, Jordan IK.

BMC Genomics. 2008 May 17;9:226.PMID: 18485226 [PubMed - indexed for MEDLINE]Related articlesFree article

Continued colonization of the human genome by mitochondrial DNA.

Ricchetti M, Tekaia F, Dujon B.

PLoS Biol. 2004 Sep;2(9):E273. Epub 2004 Sep 7.PMID: 15361937 [PubMed - indexed for MEDLINE]Related articlesFree article

Dispersed repeats and structural reorganization in subclover chloroplast DNA.

Milligan BG, Hampton JN, Palmer JD.

Mol Biol Evol. 1989 Jul;6(4):355-68.PMID: 2615639 [PubMed - indexed for MEDLINE]Related articles