PubMed

Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum.

Brick K, Watanabe J, Pizzi E.

Genome Biol. 2008;9(12):R178. Epub 2008 Dec 18.PMID: 19094208 [PubMed - indexed for MEDLINE]Related articlesFree article

In silico discovery of transcription regulatory elements in Plasmodium falciparum.

Young JA, Johnson JR, Benner C, Yan SF, Chen K, Le Roch KG, Zhou Y, Winzeler EA.

BMC Genomics. 2008 Feb 7;9:70.PMID: 18257930 [PubMed - indexed for MEDLINE]Related articlesFree article

Physics-based gene identification: proof of concept for Plasmodium falciparum.

Yeramian E, Bonnefoy S, Langsley G.

Bioinformatics. 2002 Jan;18(1):190-3.PMID: 11836228 [PubMed - indexed for MEDLINE]Related articlesFree article

Compositional constraints in the extremely GC-poor genome of Plasmodium falciparum.

Musto H, Cacciò S, Rodríguez-Maseda H, Bernardi G.

Mem Inst Oswaldo Cruz. 1997 Nov-Dec;92(6):835-41.PMID: 9566216 [PubMed - indexed for MEDLINE]Related articles

Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes.

Smargiasso N, Gabelica V, Damblon C, Rosu F, De Pauw E, Teulade-Fichou MP, Rowe JA, Claessens A.

BMC Genomics. 2009 Aug 6;10:362.PMID: 19660104 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome sequencing. Closing in on a deadly parasite's genome.

Pennisi E.

Science. 2000 Oct 20;290(5491):439.PMID: 11183759 [PubMed - indexed for MEDLINE]Related articles

Distinct frequency-distributions of homopolymeric DNA tracts in different genomes.

Dechering KJ, Cuelenaere K, Konings RN, Leunissen JA.

Nucleic Acids Res. 1998 Sep 1;26(17):4056-62.PMID: 9705519 [PubMed - indexed for MEDLINE]Related articlesFree article

piggyBac is an effective tool for functional analysis of the Plasmodium falciparum genome.

Balu B, Chauhan C, Maher SP, Shoue DA, Kissinger JC, Fraser MJ Jr, Adams JH.

BMC Microbiol. 2009 May 7;9:83.PMID: 19422698 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of putative regulatory motifs in the upstream regions of co-expressed functional groups of genes in Plasmodium falciparum.

Iengar P, Joshi NV.

BMC Genomics. 2009 Jan 13;10:18.PMID: 19144114 [PubMed - indexed for MEDLINE]Related articlesFree article

Sequencing strategies for parasite genomes.

Bartholomeu D, El-Sayed NM.

Methods Mol Biol. 2004;270:1-16.PMID: 15153620 [PubMed - indexed for MEDLINE]Related articles

Clonally variant gene families in Plasmodium falciparum share a common activation factor.

Howitt CA, Wilinski D, Llinás M, Templeton TJ, Dzikowski R, Deitsch KW.

Mol Microbiol. 2009 Sep;73(6):1171-85. Epub 2009 Aug 24.PMID: 19708920 [PubMed - indexed for MEDLINE]Related articles

Generic eukaryotic core promoter prediction using structural features of DNA.

Abeel T, Saeys Y, Bonnet E, Rouzé P, Van de Peer Y.

Genome Res. 2008 Feb;18(2):310-23. Epub 2007 Dec 20.PMID: 18096745 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene copy number variation throughout the Plasmodium falciparum genome.

Cheeseman IH, Gomez-Escobar N, Carret CK, Ivens A, Stewart LB, Tetteh KK, Conway DJ.

BMC Genomics. 2009 Aug 4;10:353.PMID: 19653891 [PubMed - indexed for MEDLINE]Related articlesFree article

Revisiting the Plasmodium falciparum RIFIN family: from comparative genomics to 3D-model prediction.

Bultrini E, Brick K, Mukherjee S, Zhang Y, Silvestrini F, Alano P, Pizzi E.

BMC Genomics. 2009 Sep 21;10:445.PMID: 19769795 [PubMed - indexed for MEDLINE]Related articlesFree article

Structural properties of promoters: similarities and differences between prokaryotes and eukaryotes.

Kanhere A, Bansal M.

Nucleic Acids Res. 2005 Jun 6;33(10):3165-75. Print 2005.PMID: 15939933 [PubMed - indexed for MEDLINE]Related articlesFree article

The genome of Plasmodium falciparum. I: DNA base composition.

Pollack Y, Katzen AL, Spira DT, Golenser J.

Nucleic Acids Res. 1982 Jan 22;10(2):539-46.PMID: 6278419 [PubMed - indexed for MEDLINE]Related articlesFree article

Plasmodium falciparum and Plasmodium vivax: so similar, yet very different.

Das A, Sharma M, Gupta B, Dash AP.

Parasitol Res. 2009 Oct;105(4):1169-71. Epub 2009 Jun 20.PMID: 19543915 [PubMed - indexed for MEDLINE]Related articles

Identification and annotation of promoter regions in microbial genome sequences on the basis of DNA stability.

Rangannan V, Bansal M.

J Biosci. 2007 Aug;32(5):851-62.PMID: 17914227 [PubMed - indexed for MEDLINE]Related articlesFree article

Thermal asymmetric interlaced PCR amplification of YAC insert end fragments for chromosome walking in Plasmodium falciparum and other A/T-rich genomes.

Foster JM, Christodoulou Z, Cowan GM, Newbold CI.

Biotechniques. 1999 Aug;27(2):240, 244, 246. No abstract available. PMID: 10457822 [PubMed - indexed for MEDLINE]Related articles

Data mining parasite genomes.

Berriman M.

Parasitology. 2004;128 Suppl 1:S23-31. Review.PMID: 16454895 [PubMed - indexed for MEDLINE]Related articles