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Towards structured output prediction of enzyme function.
Astikainen K, Holm L, Pitkänen E, Szedmak S, Rousu J.
BMC Proc. 2008 Dec 17;2 Suppl 4:S2.PMID: 19091049 [PubMed - in process]Related articlesFree article
SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.
Melvin I, Ie E, Kuang R, Weston J, Stafford WN, Leslie C.
BMC Bioinformatics. 2007 May 22;8 Suppl 4:S2.PMID: 17570145 [PubMed - indexed for MEDLINE]Related articlesFree article
Mismatch string kernels for discriminative protein classification.
Leslie CS, Eskin E, Cohen A, Weston J, Noble WS.
Bioinformatics. 2004 Mar 1;20(4):467-76. Epub 2004 Jan 22.PMID: 14990442 [PubMed - indexed for MEDLINE]Related articlesFree article
SCPRED: accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences.
Kurgan L, Cios K, Chen K.
BMC Bioinformatics. 2008 May 1;9:226.PMID: 18452616 [PubMed - indexed for MEDLINE]Related articlesFree article
Efficiency analysis of KNN and minimum distance-based classifiers in enzyme family prediction.
Nasibov E, Kandemir-Cavas C.
Comput Biol Chem. 2009 Sep 28. [Epub ahead of print]PMID: 19853514 [PubMed - as supplied by publisher]Related articles
A regression-based K nearest neighbor algorithm for gene function prediction from heterogeneous data.
Yao Z, Ruzzo WL.
BMC Bioinformatics. 2006 Mar 20;7 Suppl 1:S11.PMID: 16723004 [PubMed - indexed for MEDLINE]Related articlesFree article
A simplified approach to disulfide connectivity prediction from protein sequences.
Vincent M, Passerini A, Labbé M, Frasconi P.
BMC Bioinformatics. 2008 Jan 14;9:20.PMID: 18194539 [PubMed - indexed for MEDLINE]Related articlesFree article
Computational identification of ubiquitylation sites from protein sequences.
Tung CW, Ho SY.
BMC Bioinformatics. 2008 Jul 15;9:310.PMID: 18625080 [PubMed - indexed for MEDLINE]Related articlesFree article
OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
Raghava GP, Searle SM, Audley PC, Barber JD, Barton GJ.
BMC Bioinformatics. 2003 Oct 10;4:47.PMID: 14552658 [PubMed - indexed for MEDLINE]Related articlesFree article
Enhanced protein fold recognition through a novel data integration approach.
Ying Y, Huang K, Campbell C.
BMC Bioinformatics. 2009 Aug 26;10:267.PMID: 19709406 [PubMed - in process]Related articlesFree article
Graph wavelet alignment kernels for drug virtual screening.
Smalter A, Huan J, Lushington G.
Comput Syst Bioinformatics Conf. 2008;7:327-38.PMID: 19642292 [PubMed - indexed for MEDLINE]Related articles
Prediction of enzyme classification from protein sequence without the use of sequence similarity.
des Jardins M, Karp PD, Krummenacker M, Lee TJ, Ouzounis CA.
Proc Int Conf Intell Syst Mol Biol. 1997;5:92-9.PMID: 9322021 [PubMed - indexed for MEDLINE]Related articles
Kernel-imbedded Gaussian processes for disease classification using microarray gene expression data.
Zhao X, Cheung LW.
BMC Bioinformatics. 2007 Feb 28;8:67.PMID: 17328811 [PubMed - indexed for MEDLINE]Related articlesFree article
Evaluation of different biological data and computational classification methods for use in protein interaction prediction.
Qi Y, Bar-Joseph Z, Klein-Seetharaman J.
Proteins. 2006 May 15;63(3):490-500.PMID: 16450363 [PubMed - indexed for MEDLINE]Related articles
PepDist: a new framework for protein-peptide binding prediction based on learning peptide distance functions.
Hertz T, Yanover C.
BMC Bioinformatics. 2006 Mar 20;7 Suppl 1:S3.PMID: 16723006 [PubMed - indexed for MEDLINE]Related articlesFree article
Protein disorder prediction by condensed PSSM considering propensity for order or disorder.
Su CT, Chen CY, Ou YY.
BMC Bioinformatics. 2006 Jun 23;7:319.PMID: 16796745 [PubMed - indexed for MEDLINE]Related articlesFree article
Accurate prediction of enzyme subfamily class using an adaptive fuzzy k-nearest neighbor method.
Huang WL, Chen HM, Hwang SF, Ho SY.
Biosystems. 2007 Sep-Oct;90(2):405-13. Epub 2006 Oct 26.PMID: 17140725 [PubMed - indexed for MEDLINE]Related articles
Using Nearest Feature Line and Tunable Nearest Neighbor methods for prediction of protein subcellular locations.
Gao QB, Wang ZZ.
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Statistical evaluation of local alignment features predicting allergenicity using supervised classification algorithms.
Soeria-Atmadja D, Zorzet A, Gustafsson MG, Hammerling U.
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Predicting enzyme class from protein structure without alignments.
Dobson PD, Doig AJ.
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