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    Results: 1 to 20 of 91

    1.

    Prioritizing functional modules mediating genetic perturbations and their phenotypic effects: a global strategy.

    Wang L, Sun F, Chen T.

    Genome Biol. 2008;9(12):R174. Epub 2008 Dec 16.

    PMID:
    19087245
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    A Bayesian partition method for detecting pleiotropic and epistatic eQTL modules.

    Zhang W, Zhu J, Schadt EE, Liu JS.

    PLoS Comput Biol. 2010 Jan 15;6(1):e1000642.

    PMID:
    20090830
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Reverse engineering module networks by PSO-RNN hybrid modeling.

    Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

    BMC Genomics. 2009 Jul 7;10 Suppl 1:S15.

    PMID:
    19594874
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    A DNA integrity network in the yeast Saccharomyces cerevisiae.

    Pan X, Ye P, Yuan DS, Wang X, Bader JS, Boeke JD.

    Cell. 2006 Mar 10;124(5):1069-81. Epub 2006 Feb 16.

    PMID:
    16487579
    [PubMed - indexed for MEDLINE]
    6.
    7.

    Modeling synthetic lethality.

    Le Meur N, Gentleman R.

    Genome Biol. 2008;9(9):R135. Epub 2008 Sep 12.

    PMID:
    18789146
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Modular analysis of the probabilistic genetic interaction network.

    Hou L, Wang L, Qian M, Li D, Tang C, Zhu Y, Deng M, Li F.

    Bioinformatics. 2011 Mar 15;27(6):853-9. Epub 2011 Jan 28.

    PMID:
    21278184
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Global protein function annotation through mining genome-scale data in yeast Saccharomyces cerevisiae.

    Chen Y, Xu D.

    Nucleic Acids Res. 2004 Dec 7;32(21):6414-24. Print 2004.

    PMID:
    15585665
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    A genomewide functional network for the laboratory mouse.

    Guan Y, Myers CL, Lu R, Lemischka IR, Bult CJ, Troyanskaya OG.

    PLoS Comput Biol. 2008 Sep 26;4(9):e1000165.

    PMID:
    18818725
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Using Bayesian networks to analyze expression data.

    Friedman N, Linial M, Nachman I, Pe'er D.

    J Comput Biol. 2000;7(3-4):601-20.

    PMID:
    11108481
    [PubMed - indexed for MEDLINE]
    12.

    Inferring subnetworks from perturbed expression profiles.

    Pe'er D, Regev A, Elidan G, Friedman N.

    Bioinformatics. 2001;17 Suppl 1:S215-24.

    PMID:
    11473012
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    Global insights into protein complexes through integrated analysis of the reliable interactome and knockout lethality.

    Saito R, Suzuki H, Hayashizaki Y.

    Biochem Biophys Res Commun. 2003 Feb 14;301(3):633-40.

    PMID:
    12565826
    [PubMed - indexed for MEDLINE]
    15.

    A predictive model of the oxygen and heme regulatory network in yeast.

    Kundaje A, Xin X, Lan C, Lianoglou S, Zhou M, Zhang L, Leslie C.

    PLoS Comput Biol. 2008 Nov;4(11):e1000224. Epub 2008 Nov 14.

    PMID:
    19008939
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Global network analysis of phenotypic effects: protein networks and toxicity modulation in Saccharomyces cerevisiae.

    Said MR, Begley TJ, Oppenheim AV, Lauffenburger DA, Samson LD.

    Proc Natl Acad Sci U S A. 2004 Dec 28;101(52):18006-11. Epub 2004 Dec 17.

    PMID:
    15608068
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    A Bayesian network driven approach to model the transcriptional response to nitric oxide in Saccharomyces cerevisiae.

    Zhu J, Jambhekar A, Sarver A, DeRisi J.

    PLoS One. 2006 Dec 20;1:e94.

    PMID:
    17183726
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Information flow analysis of interactome networks.

    Missiuro PV, Liu K, Zou L, Ross BC, Zhao G, Liu JS, Ge H.

    PLoS Comput Biol. 2009 Apr;5(4):e1000350. Epub 2009 Apr 10.

    PMID:
    19503817
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    A copula method for modeling directional dependence of genes.

    Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

    BMC Bioinformatics. 2008 May 1;9:225.

    PMID:
    18447957
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    A probabilistic functional network of yeast genes.

    Lee I, Date SV, Adai AT, Marcotte EM.

    Science. 2004 Nov 26;306(5701):1555-8.

    PMID:
    15567862
    [PubMed - indexed for MEDLINE]

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