PubMed

Cinfony--combining Open Source cheminformatics toolkits behind a common interface.

O'Boyle NM, Hutchison GR.

Chem Cent J. 2008 Dec 3;2:24.PMID: 19055766 [PubMed]Free PMC ArticleFree textRelated citations

Pybel: a Python wrapper for the OpenBabel cheminformatics toolkit.

O'Boyle NM, Morley C, Hutchison GR.

Chem Cent J. 2008 Mar 9;2:5.PMID: 18328109 [PubMed]Free PMC ArticleFree textRelated citations

Measuring the impact of the computer on the consultation: an open source application to combine multiple observational outputs.

Pflug B, Kumarapeli P, van Vlymen J, Ammenwerth E, de Lusignan S.

Inform Health Soc Care. 2010 Jan;35(1):10-24.PMID: 20302436 [PubMed - indexed for MEDLINE]Related citations

CDK-Taverna: an open workflow environment for cheminformatics.

Kuhn T, Willighagen EL, Zielesny A, Steinbeck C.

BMC Bioinformatics. 2010 Mar 29;11:159.PMID: 20346188 [PubMed - in process]Free PMC ArticleFree textRelated citations

The Bio* toolkits--a brief overview.

Mangalam H.

Brief Bioinform. 2002 Sep;3(3):296-302.PMID: 12230038 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

Molecular query language (MQL)--a context-free grammar for substructure matching.

Proschak E, Wegner JK, Schüller A, Schneider G, Fechner U.

J Chem Inf Model. 2007 Mar-Apr;47(2):295-301.PMID: 17381167 [PubMed - indexed for MEDLINE]Related citations

Bioclipse: an open source workbench for chemo- and bioinformatics.

Spjuth O, Helmus T, Willighagen EL, Kuhn S, Eklund M, Wagener J, Murray-Rust P, Steinbeck C, Wikberg JE.

BMC Bioinformatics. 2007 Feb 22;8:59.PMID: 17316423 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

DICOM router: an open source toolbox for communication and correction of DICOM objects.

Hackländer T, Kleber K, Martin J, Mertens H.

Acad Radiol. 2005 Mar;12(3):385-92.PMID: 15766700 [PubMed - indexed for MEDLINE]Related citations

A comparison of common programming languages used in bioinformatics.

Fourment M, Gillings MR.

BMC Bioinformatics. 2008 Feb 5;9:82.PMID: 18251993 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Modeling biochemical transformation processes and information processing with Narrator.

Mandel JJ, Fuss H, Palfreyman NM, Dubitzky W.

BMC Bioinformatics. 2007 Mar 27;8:103.PMID: 17389034 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

MARVIN: a medical research application framework based on open source software.

Rudolph T, Puls M, Anderegg C, Ebert L, Broehan M, Rudin A, Kowal J.

Comput Methods Programs Biomed. 2008 Aug;91(2):165-74. Epub 2008 Jun 9.PMID: 18541330 [PubMed - indexed for MEDLINE]Related citations

Automated programming for bioinformatics algorithm deployment.

Alterovitz G, Jiwaji A, Ramoni MF.

Bioinformatics. 2008 Feb 1;24(3):450-1. Epub 2008 Jan 3.PMID: 18174185 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

Biopython: freely available Python tools for computational molecular biology and bioinformatics.

Cock PJ, Antao T, Chang JT, Chapman BA, Cox CJ, Dalke A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B, de Hoon MJ.

Bioinformatics. 2009 Jun 1;25(11):1422-3. Epub 2009 Mar 20.PMID: 19304878 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination.

Hancock D, Wilson M, Velarde G, Morrison N, Hayes A, Hulme H, Wood AJ, Nashar K, Kell DB, Brass A.

BMC Bioinformatics. 2005 Nov 3;6:264.PMID: 16269077 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Java Treeview--extensible visualization of microarray data.

Saldanha AJ.

Bioinformatics. 2004 Nov 22;20(17):3246-8. Epub 2004 Jun 4.PMID: 15180930 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format.

Krawczyk J, Goesmann A, Nolte R, Werber M, Weisshaar B.

Source Code Biol Med. 2009 Jul 21;4:4.PMID: 19622158 [PubMed - in process]Free PMC ArticleFree textRelated citations

RGG: a general GUI Framework for R scripts.

Visne I, Dilaveroglu E, Vierlinger K, Lauss M, Yildiz A, Weinhaeusel A, Noehammer C, Leisch F, Kriegner A.

BMC Bioinformatics. 2009 Mar 2;10:74.PMID: 19254356 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Recent developments of the chemistry development kit (CDK) - an open-source java library for chemo- and bioinformatics.

Steinbeck C, Hoppe C, Kuhn S, Floris M, Guha R, Willighagen EL.

Curr Pharm Des. 2006;12(17):2111-20. Review.PMID: 16796559 [PubMed - indexed for MEDLINE]Related citations

PYCHEM: a multivariate analysis package for python.

Jarvis RM, Broadhurst D, Johnson H, O'Boyle NM, Goodacre R.

Bioinformatics. 2006 Oct 15;22(20):2565-6. Epub 2006 Jul 31.PMID: 16882648 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

Design of a modular and low-latency virtual-environment platform for applications in motor adaptation research, neurological disorders, and neurorehabilitation.

Myall DJ, MacAskill MR, Davidson PR, Anderson TJ, Jones RD.

IEEE Trans Neural Syst Rehabil Eng. 2008 Jun;16(3):298-309.PMID: 18586609 [PubMed - indexed for MEDLINE]Related citations