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    Results: 1 to 20 of 81

    1.

    Network-based approaches for linking metabolism with environment.

    Janga SC, Babu MM.

    Genome Biol. 2008;9(11):239. Epub 2008 Nov 24. Review.

    PMID:
    19040774
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    DREAMS of metabolism.

    Soh KC, Hatzimanikatis V.

    Trends Biotechnol. 2010 Oct;28(10):501-8. Epub 2010 Aug 19.

    PMID:
    20727603
    [PubMed - indexed for MEDLINE]
    3.

    Genome-scale models of bacterial metabolism: reconstruction and applications.

    Durot M, Bourguignon PY, Schachter V.

    FEMS Microbiol Rev. 2009 Jan;33(1):164-90. Epub 2008 Dec 3. Review.

    PMID:
    19067749
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    New surveyor tools for charting microbial metabolic maps.

    Breitling R, Vitkup D, Barrett MP.

    Nat Rev Microbiol. 2008 Feb;6(2):156-61. Review.

    PMID:
    18026122
    [PubMed - indexed for MEDLINE]
    5.

    Metabolic-network-driven analysis of bacterial ecological strategies.

    Freilich S, Kreimer A, Borenstein E, Yosef N, Sharan R, Gophna U, Ruppin E.

    Genome Biol. 2009;10(6):R61. Epub 2009 Jun 5.

    PMID:
    19500338
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Reconstruction and analysis of human liver-specific metabolic network based on CNHLPP data.

    Zhao J, Geng C, Tao L, Zhang D, Jiang Y, Tang K, Zhu R, Yu H, Zhang W, He F, Li Y, Cao Z.

    J Proteome Res. 2010 Apr 5;9(4):1648-58.

    PMID:
    20136149
    [PubMed - indexed for MEDLINE]
    7.

    A genome-scale, constraint-based approach to systems biology of human metabolism.

    Mo ML, Jamshidi N, Palsson BØ.

    Mol Biosyst. 2007 Sep;3(9):598-603. Epub 2007 Jul 11.

    PMID:
    17700859
    [PubMed - indexed for MEDLINE]
    Free Article
    8.

    Elucidation of multifaceted evolutionary processes of microorganisms by comparative genome-based analysis.

    Nguyen TV, Hong SH, Lee SY.

    J Microbiol Biotechnol. 2009 Nov;19(11):1301-5.

    PMID:
    19996680
    [PubMed - indexed for MEDLINE]
    Free Article
    9.

    Computational approaches to the topology, stability and dynamics of metabolic networks.

    Steuer R.

    Phytochemistry. 2007 Aug-Sep;68(16-18):2139-51. Epub 2007 Jun 14.

    PMID:
    17574639
    [PubMed - indexed for MEDLINE]
    10.

    Spontaneous reaction silencing in metabolic optimization.

    Nishikawa T, Gulbahce N, Motter AE.

    PLoS Comput Biol. 2008 Dec;4(12):e1000236. Epub 2008 Dec 5.

    PMID:
    19057639
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Metabolic networks are NP-hard to reconstruct.

    Nikoloski Z, Grimbs S, May P, Selbig J.

    J Theor Biol. 2008 Oct 21;254(4):807-16. Epub 2008 Jul 22.

    PMID:
    18682254
    [PubMed - indexed for MEDLINE]
    12.

    Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments.

    van Riel NA.

    Brief Bioinform. 2006 Dec;7(4):364-74. Epub 2006 Nov 14. Review.

    PMID:
    17107967
    [PubMed - indexed for MEDLINE]
    Free Article
    13.

    Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox.

    Becker SA, Feist AM, Mo ML, Hannum G, Palsson BØ, Herrgard MJ.

    Nat Protoc. 2007;2(3):727-38.

    PMID:
    17406635
    [PubMed - indexed for MEDLINE]
    14.

    The Edinburgh human metabolic network reconstruction and its functional analysis.

    Ma H, Sorokin A, Mazein A, Selkov A, Selkov E, Demin O, Goryanin I.

    Mol Syst Biol. 2007;3:135. Epub 2007 Sep 18.

    PMID:
    17882155
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Metabolic pathways in the post-genome era.

    Papin JA, Price ND, Wiback SJ, Fell DA, Palsson BO.

    Trends Biochem Sci. 2003 May;28(5):250-8. Review.

    PMID:
    12765837
    [PubMed - indexed for MEDLINE]
    16.

    [Advances in microbial eco-systems metabolic network study--a review].

    Xu M, Sun G, Guo J.

    Wei Sheng Wu Xue Bao. 2010 Apr 4;50(4):438-43. Review. Chinese.

    PMID:
    20560344
    [PubMed - indexed for MEDLINE]
    17.

    Network-based prediction of human tissue-specific metabolism.

    Shlomi T, Cabili MN, Herrgård MJ, Palsson BØ, Ruppin E.

    Nat Biotechnol. 2008 Sep;26(9):1003-10.

    PMID:
    18711341
    [PubMed - indexed for MEDLINE]
    18.

    Reconstructing the metabolic network of a bacterium from its genome.

    Francke C, Siezen RJ, Teusink B.

    Trends Microbiol. 2005 Nov;13(11):550-8. Epub 2005 Sep 19. Review.

    PMID:
    16169729
    [PubMed - indexed for MEDLINE]
    19.

    METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks.

    Gille C, Hoffmann S, Holzhütter HG.

    BMC Syst Biol. 2007 Jan 9;1:5.

    PMID:
    17408512
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Coordinations between gene modules control the operation of plant amino acid metabolic networks.

    Less H, Galili G.

    BMC Syst Biol. 2009 Jan 26;3:14.

    PMID:
    19171064
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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