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    Results: 1 to 20 of 99

    1.

    A survey of visualization tools for biological network analysis.

    Pavlopoulos GA, Wegener AL, Schneider R.

    BioData Min. 2008 Nov 28;1:12.PMID: 19040716 [PubMed - in process]Related articlesFree article

    2.

    A reference guide for tree analysis and visualization.

    Pavlopoulos GA, Soldatos TG, Barbosa-Silva A, Schneider R.

    BioData Min. 2010 Feb 22;3(1):1. [Epub ahead of print]PMID: 20175922 [PubMed - as supplied by publisher]Related articlesFree article

    3.

    Graphle: Interactive exploration of large, dense graphs.

    Huttenhower C, Mehmood SO, Troyanskaya OG.

    BMC Bioinformatics. 2009 Dec 14;10:417.PMID: 20003429 [PubMed - in process]Related articlesFree article

    4.

    ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining.

    Huan T, Sivachenko AY, Harrison SH, Chen JY.

    BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S5.PMID: 18793469 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Linking Cytoscape and the corynebacterial reference database CoryneRegNet.

    Baumbach J, Apeltsin L.

    BMC Genomics. 2008 Apr 21;9:184.PMID: 18426593 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment.

    Chin G Jr, Chavarria DG, Nakamura GC, Sofia HJ.

    BMC Bioinformatics. 2008 May 28;9 Suppl 6:S6.PMID: 18541059 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

    Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

    BMC Bioinformatics. 2006 Apr 7;7:195.PMID: 16603075 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Generalized lattice graphs for 2D-visualization of biological information.

    González-Díaz H, Pérez-Montoto LG, Duardo-Sanchez A, Paniagua E, Vázquez-Prieto S, Vilas R, Dea-Ayuela MA, Bolas-Fernández F, Munteanu CR, Dorado J, Costas J, Ubeira FM.

    J Theor Biol. 2009 Nov 7;261(1):136-47. Epub 2009 Jul 29.PMID: 19646452 [PubMed - in process]Related articles

    9.

    A linear programming approach for estimating the structure of a sparse linear genetic network from transcript profiling data.

    Bhadra S, Bhattacharyya C, Chandra NR, Mian IS.

    Algorithms Mol Biol. 2009 Feb 24;4:5.PMID: 19239685 [PubMed]Related articlesFree article

    10.

    Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalised Data Structures.

    Koehler J, Rawlings C, Verrier P, Mitchell R, Skusa A, Ruegg A, Philippi S.

    In Silico Biol. 2005;5(1):33-44.PMID: 15972003 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    SpectralNET--an application for spectral graph analysis and visualization.

    Forman JJ, Clemons PA, Schreiber SL, Haggarty SJ.

    BMC Bioinformatics. 2005 Oct 19;6:260.PMID: 16236170 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology.

    Chalmel F, Primig M.

    BMC Bioinformatics. 2008 Feb 6;9:86.PMID: 18254954 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    GeneTools--application for functional annotation and statistical hypothesis testing.

    Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

    BMC Bioinformatics. 2006 Oct 24;7:470.PMID: 17062145 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    BNDB - the Biochemical Network Database.

    Küntzer J, Backes C, Blum T, Gerasch A, Kaufmann M, Kohlbacher O, Lenhof HP.

    BMC Bioinformatics. 2007 Oct 2;8:367.PMID: 17910766 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    IntNetDB v1.0: an integrated protein-protein interaction network database generated by a probabilistic model.

    Xia K, Dong D, Han JD.

    BMC Bioinformatics. 2006 Nov 18;7:508.PMID: 17112386 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    JNets: exploring networks by integrating annotation.

    Macpherson JI, Pinney JW, Robertson DL.

    BMC Bioinformatics. 2009 Mar 26;10:95.PMID: 19323810 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    SNAVI: Desktop application for analysis and visualization of large-scale signaling networks.

    Ma'ayan A, Jenkins SL, Webb RL, Berger SI, Purushothaman SP, Abul-Husn NS, Posner JM, Flores T, Iyengar R.

    BMC Syst Biol. 2009 Jan 20;3:10.PMID: 19154595 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Network Analysis Tools: from biological networks to clusters and pathways.

    Brohée S, Faust K, Lima-Mendez G, Vanderstocken G, van Helden J.

    Nat Protoc. 2008;3(10):1616-29.PMID: 18802442 [PubMed - indexed for MEDLINE]Related articles

    19.

    From SNPs to pathways: integration of functional effect of sequence variations on models of cell signalling pathways.

    Bauer-Mehren A, Furlong LI, Rautschka M, Sanz F.

    BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S6.PMID: 19758470 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Network visualization and network analysis.

    Nikiforova VJ, Willmitzer L.

    EXS. 2007;97:245-75. Review.PMID: 17432271 [PubMed - indexed for MEDLINE]Related articles

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