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Peptide length significantly influences in vitro affinity for MHC class II molecules.

O'Brien C, Flower DR, Feighery C.

Immunome Res. 2008 Nov 26;4:6.PMID: 19036163 [PubMed - in process]Related articlesFree article

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method.

Nielsen M, Lundegaard C, Lund O.

BMC Bioinformatics. 2007 Jul 4;8:238.PMID: 17608956 [PubMed - indexed for MEDLINE]Related articlesFree article

Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms.

Rajapakse M, Schmidt B, Feng L, Brusic V.

BMC Bioinformatics. 2007 Nov 22;8:459.PMID: 18031584 [PubMed - indexed for MEDLINE]Related articlesFree article

Toward prediction of class II mouse major histocompatibility complex peptide binding affinity: in silico bioinformatic evaluation using partial least squares, a robust multivariate statistical technique.

Hattotuwagama CK, Toseland CP, Guan P, Taylor DJ, Hemsley SL, Doytchinova IA, Flower DR.

J Chem Inf Model. 2006 May-Jun;46(3):1491-502.PMID: 16711768 [PubMed - indexed for MEDLINE]Related articles

Toward the prediction of class I and II mouse major histocompatibility complex-peptide-binding affinity: in silico bioinformatic step-by-step guide using quantitative structure-activity relationships.

Hattotuwagama CK, Doytchinova IA, Flower DR.

Methods Mol Biol. 2007;409:227-45.PMID: 18450004 [PubMed - indexed for MEDLINE]Related articles

Predicting Class II MHC-Peptide binding: a kernel based approach using similarity scores.

Salomon J, Flower DR.

BMC Bioinformatics. 2006 Nov 14;7:501.PMID: 17105666 [PubMed - indexed for MEDLINE]Related articlesFree article

Binding interactions between peptides and proteins of the class II major histocompatibility complex.

McFarland BJ, Beeson C.

Med Res Rev. 2002 Mar;22(2):168-203.PMID: 11857638 [PubMed - indexed for MEDLINE]Related articles

Identification of MHC class II binding peptides: microarray and soluble MHC class II molecules.

Gaseitsiwe S, Maeurer MJ.

Methods Mol Biol. 2009;524:417-26.PMID: 19377962 [PubMed - indexed for MEDLINE]Related articles

Dynamic flexibility of a peptide-binding groove of human HLA-DR1 class II MHC molecules: normal mode analysis of the antigen peptide-class II MHC complex.

Nojima H, Takeda-Shitaka M, Kurihara Y, Kamiya K, Umeyama H.

Chem Pharm Bull (Tokyo). 2003 Aug;51(8):923-8.PMID: 12913229 [PubMed - indexed for MEDLINE]Related articlesFree article

Crystal structure of staphylococcal enterotoxin I (SEI) in complex with a human major histocompatibility complex class II molecule.

Fernández MM, Guan R, Swaminathan CP, Malchiodi EL, Mariuzza RA.

J Biol Chem. 2006 Sep 1;281(35):25356-64. Epub 2006 Jul 6.PMID: 16829512 [PubMed - indexed for MEDLINE]Related articlesFree article

NetMHCpan, a method for MHC class I binding prediction beyond humans.

Hoof I, Peters B, Sidney J, Pedersen LE, Sette A, Lund O, Buus S, Nielsen M.

Immunogenetics. 2009 Jan;61(1):1-13. Epub 2008 Nov 12.PMID: 19002680 [PubMed - indexed for MEDLINE]Related articles

Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan.

Nielsen M, Lundegaard C, Blicher T, Peters B, Sette A, Justesen S, Buus S, Lund O.

PLoS Comput Biol. 2008 Jul 4;4(7):e1000107.PMID: 18604266 [PubMed - indexed for MEDLINE]Related articlesFree article

Peptide length-based prediction of peptide-MHC class II binding.

Chang ST, Ghosh D, Kirschner DE, Linderman JJ.

Bioinformatics. 2006 Nov 15;22(22):2761-7. Epub 2006 Sep 25.PMID: 17000752 [PubMed - indexed for MEDLINE]Related articlesFree article

Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research.

Lin HH, Zhang GL, Tongchusak S, Reinherz EL, Brusic V.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S22.PMID: 19091022 [PubMed - indexed for MEDLINE]Related articlesFree article

Shift-invariant adaptive double threading: learning MHC II-peptide binding.

Zaitlen N, Reyes-Gomez M, Heckerman D, Jojic N.

J Comput Biol. 2008 Sep;15(7):927-42.PMID: 18771399 [PubMed - indexed for MEDLINE]Related articles

Preferential binding of unusually long peptides to MHC class I and its influence on the selection of target peptides for T cell recognition.

Burrows JM, Bell MJ, Brennan R, Miles JJ, Khanna R, Burrows SR.

Mol Immunol. 2008 Mar;45(6):1818-24. Epub 2007 Nov 5.PMID: 17981331 [PubMed - indexed for MEDLINE]Related articles

Major histocompatibility complex class II molecule-human immunodeficiency virus peptide analysis using a microarray chip.

Gaseitsiwe S, Valentini D, Ahmed R, Mahdavifar S, Magalhaes I, Zerweck J, Schutkowski M, Gautherot E, Montero F, Ehrnst A, Reilly M, Maeurer M.

Clin Vaccine Immunol. 2009 Apr;16(4):567-73. Epub 2009 Feb 18.PMID: 19225081 [PubMed - indexed for MEDLINE]Related articlesFree article

Dynamic characteristics of a peptide-binding groove of human HLA-A2 class I MHC molecules: normal mode analysis of the antigen peptide-class I MHC complex.

Nojima H, Takeda-Shitaka M, Kurihara Y, Adachi M, Yoneda S, Kamiya K, Umeyama H.

Chem Pharm Bull (Tokyo). 2002 Sep;50(9):1209-14.PMID: 12237537 [PubMed - indexed for MEDLINE]Related articlesFree article

Statistical deconvolution of enthalpic energetic contributions to MHC-peptide binding affinity.

Davies MN, Hattotuwagama CK, Moss DS, Drew MG, Flower DR.

BMC Struct Biol. 2006 Mar 20;6:5.PMID: 16549002 [PubMed - indexed for MEDLINE]Related articlesFree article

Extensive major histocompatibility complex class I binding promiscuity for Mycobacterium tuberculosis TB10.4 peptides and immune dominance of human leucocyte antigen (HLA)-B*0702 and HLA-B*0801 alleles in TB10.4 CD8(+) T-cell responses.

Axelsson-Robertson R, Weichold F, Sizemore D, Wulf M, Skeiky YA, Sadoff J, Maeurer MJ.

Immunology. . [Epub ahead of print]PMID: 20002212 [PubMed - as supplied by publisher]Related articles