PubMed

ExonMiner: Web service for analysis of GeneChip Exon array data.

Numata K, Yoshida R, Nagasaki M, Saito A, Imoto S, Miyano S.

BMC Bioinformatics. 2008 Nov 26;9:494.PMID: 19036125 [PubMed - indexed for MEDLINE]Related articlesFree article

A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays.

Yoshida R, Numata K, Imoto S, Nagasaki M, Doi A, Ueno K, Miyano S.

Genome Inform. 2006;17(1):88-99.PMID: 17503359 [PubMed - indexed for MEDLINE]Related articles

Gene expression and isoform variation analysis using Affymetrix Exon Arrays.

Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.

BMC Genomics. 2008 Nov 7;9:529. Erratum in: BMC Genomics. 2009 Mar 23;10. doi: 10.1186/1471-2164-10-121. PMID: 18990248 [PubMed - indexed for MEDLINE]Related articlesFree article

A statistical method for predicting splice variants between two groups of samples using GeneChip expression array data.

Fan W, Khalid N, Hallahan AR, Olson JM, Zhao LP.

Theor Biol Med Model. 2006 Apr 7;3:19.PMID: 16603076 [PubMed - indexed for MEDLINE]Related articlesFree article

easyExon--a Java-based GUI tool for processing and visualization of Affymetrix exon array data.

Chang TY, Li YY, Jen CH, Yang TP, Lin CH, Hsu MT, Wang HW.

BMC Bioinformatics. 2008 Oct 14;9:432.PMID: 18851762 [PubMed - indexed for MEDLINE]Related articlesFree article

Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.

Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y.

BMC Genomics. 2006 Dec 27;7:325.PMID: 17192196 [PubMed - indexed for MEDLINE]Related articlesFree article

Dissecting an alternative splicing analysis workflow for GeneChip Exon 1.0 ST Affymetrix arrays.

Della Beffa C, Cordero F, Calogero RA.

BMC Genomics. 2008 Nov 28;9:571.PMID: 19040723 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation.

Ha KCh, Coulombe-Huntington J, Majewski J.

BMC Genomics. 2009 Nov 12;10:519.PMID: 19909511 [PubMed - in process]Related articlesFree article

EzArray: a web-based highly automated Affymetrix expression array data management and analysis system.

Zhu Y, Zhu Y, Xu W.

BMC Bioinformatics. 2008 Jan 24;9:46.PMID: 18218103 [PubMed - indexed for MEDLINE]Related articlesFree article

High resolution analysis of the human transcriptome: detection of extensive alternative splicing independent of transcriptional activity.

Zhou W, Calciano MA, Jordan H, Brenner M, Johnson S, Wu D, Lei L, Pallares D, Beurdeley P, Rouet F, Gill PS, Bracco L, Soucaille C, Einstein R.

BMC Genet. 2009 Oct 5;10:63.PMID: 19804644 [PubMed - indexed for MEDLINE]Related articlesFree article

A Web-based and Grid-enabled dChip version for the analysis of large sets of gene expression data.

Corradi L, Fato M, Porro I, Scaglione S, Torterolo L.

BMC Bioinformatics. 2008 Nov 13;9:480.PMID: 19014540 [PubMed - indexed for MEDLINE]Related articlesFree article

CGHPRO -- a comprehensive data analysis tool for array CGH.

Chen W, Erdogan F, Ropers HH, Lenzner S, Ullmann R.

BMC Bioinformatics. 2005 Apr 5;6:85.PMID: 15807904 [PubMed - indexed for MEDLINE]Related articlesFree article

Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study.

Wang J, Delabie J, Aasheim H, Smeland E, Myklebost O.

BMC Bioinformatics. 2002 Nov 24;3:36. Epub 2002 Nov 24.PMID: 12445336 [PubMed - indexed for MEDLINE]Related articlesFree article

CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis.

Rainer J, Sanchez-Cabo F, Stocker G, Sturn A, Trajanoski Z.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W498-503.PMID: 16845058 [PubMed - indexed for MEDLINE]Related articlesFree article

Detection of TMPRSS2-ERG translocations in human prostate cancer by expression profiling using GeneChip Human Exon 1.0 ST arrays.

Jhavar S, Reid A, Clark J, Kote-Jarai Z, Christmas T, Thompson A, Woodhouse C, Ogden C, Fisher C, Corbishley C, De-Bono J, Eeles R, Brewer D, Cooper C.

J Mol Diagn. 2008 Jan;10(1):50-7. Epub 2007 Dec 28.PMID: 18165275 [PubMed - indexed for MEDLINE]Related articlesFree article

Pipeline for macro- and microarray analyses.

Vicentini R, Menossi M.

Braz J Med Biol Res. 2007 May;40(5):615-9.PMID: 17464422 [PubMed - indexed for MEDLINE]Related articlesFree article

RACE: Remote Analysis Computation for gene Expression data.

Psarros M, Heber S, Sick M, Thoppae G, Harshman K, Sick B.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W638-43.PMID: 15980552 [PubMed - indexed for MEDLINE]Related articlesFree article

MARS: microarray analysis, retrieval, and storage system.

Maurer M, Molidor R, Sturn A, Hartler J, Hackl H, Stocker G, Prokesch A, Scheideler M, Trajanoski Z.

BMC Bioinformatics. 2005 Apr 18;6:101.PMID: 15836795 [PubMed - indexed for MEDLINE]Related articlesFree article

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling.

Conde L, Montaner D, Burguet-Castell J, Tárraga J, Medina I, Al-Shahrour F, Dopazo J.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W81-5. Epub 2007 Apr 27.PMID: 17468499 [PubMed - indexed for MEDLINE]Related articlesFree article

EMAAS: an extensible grid-based rich internet application for microarray data analysis and management.

Barton G, Abbott J, Chiba N, Huang DW, Huang Y, Krznaric M, Mack-Smith J, Saleem A, Sherman BT, Tiwari B, Tomlinson C, Aitman T, Darlington J, Game L, Sternberg MJ, Butcher SA.

BMC Bioinformatics. 2008 Nov 25;9:493.PMID: 19032776 [PubMed - indexed for MEDLINE]Related articlesFree article