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High throughput protein-protein interaction data: clues for the architecture of protein complexes.

Krycer JR, Pang CN, Wilkins MR.

Proteome Sci. 2008 Nov 26;6:32.PMID: 19032795 [PubMed]Related articlesFree article

Are protein complexes made of cores, modules and attachments?

Pang CN, Krycer JR, Lek A, Wilkins MR.

Proteomics. 2008 Feb;8(3):425-34.PMID: 18175372 [PubMed - indexed for MEDLINE]Related articles

Subunit architecture of intact protein complexes from mass spectrometry and homology modeling.

Taverner T, Hernández H, Sharon M, Ruotolo BT, Matak-Vinković D, Devos D, Russell RB, Robinson CV.

Acc Chem Res. 2008 May;41(5):617-27. Epub 2008 Mar 4.PMID: 18314965 [PubMed - indexed for MEDLINE]Related articles

Computational approaches for detecting protein complexes from protein interaction networks: a survey.

Li X, Wu M, Kwoh CK, Ng SK.

BMC Genomics. 2010 Feb 10;11 Suppl 1:S3.PMID: 20158874 [PubMed - in process]Related articlesFree article

Discovering protein complexes in dense reliable neighborhoods of protein interaction networks.

Li XL, Foo CS, Ng SK.

Comput Syst Bioinformatics Conf. 2007;6:157-68.PMID: 17951821 [PubMed - indexed for MEDLINE]Related articlesFree article

Triangle network motifs predict complexes by complementing high-error interactomes with structural information.

Andreopoulos B, Winter C, Labudde D, Schroeder M.

BMC Bioinformatics. 2009 Jun 27;10:196.PMID: 19558694 [PubMed - indexed for MEDLINE]Related articlesFree article

Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae.

Collins SR, Kemmeren P, Zhao XC, Greenblatt JF, Spencer F, Holstege FC, Weissman JS, Krogan NJ.

Mol Cell Proteomics. 2007 Mar;6(3):439-50. Epub 2007 Jan 2.PMID: 17200106 [PubMed - indexed for MEDLINE]Related articlesFree article

Recent developments in the analysis of protein complexes.

Dziembowski A, Séraphin B.

FEBS Lett. 2004 Jan 2;556(1-3):1-6. Review.PMID: 14706816 [PubMed - indexed for MEDLINE]Related articles

Assessing reliability of protein-protein interactions by integrative analysis of data in model organisms.

Lin X, Liu M, Chen XW.

BMC Bioinformatics. 2009 Apr 29;10 Suppl 4:S5.PMID: 19426453 [PubMed - indexed for MEDLINE]Related articlesFree article

Exploiting gene deletion fitness effects in yeast to understand the modular architecture of protein complexes under different growth conditions.

Pache RA, Babu MM, Aloy P.

BMC Syst Biol. 2009 Jul 18;3:74.PMID: 19615085 [PubMed - indexed for MEDLINE]Related articlesFree article

Inferring protein-protein interactions from multiple protein domain combinations.

Kanaan SP, Huang C, Wuchty S, Chen DZ, Izaguirre JA.

Methods Mol Biol. 2009;541:43-59. Review.PMID: 19381530 [PubMed - indexed for MEDLINE]Related articles

A core-attachment based method to detect protein complexes in PPI networks.

Wu M, Li X, Kwoh CK, Ng SK.

BMC Bioinformatics. 2009 Jun 2;10:169.PMID: 19486541 [PubMed - indexed for MEDLINE]Related articlesFree article

Functional organization of the yeast proteome by a yeast interactome map.

Valente AX, Roberts SB, Buck GA, Gao Y.

Proc Natl Acad Sci U S A. 2009 Feb 3;106(5):1490-5. Epub 2009 Jan 21.PMID: 19164585 [PubMed - indexed for MEDLINE]Related articlesFree article

Identifying protein complexes in high-throughput protein interaction screens using an infinite latent feature model.

Chu W, Ghahramani Z, Krause R, Wild DL.

Pac Symp Biocomput. 2006:231-42.PMID: 17094242 [PubMed - indexed for MEDLINE]Related articlesFree article

Development of computational tools for the inference of protein interaction specificity rules and functional annotation using structural information.

Ferrè F, Via A, Ausiello G, Brannetti B, Zanzoni A, Helmer-Citterich M.

Comp Funct Genomics. 2003;4(4):416-9.PMID: 18629081 [PubMed - in process]Related articlesFree article

Proteome-wide prediction of signal flow direction in protein interaction networks based on interacting domains.

Liu W, Li D, Wang J, Xie H, Zhu Y, He F.

Mol Cell Proteomics. 2009 Sep;8(9):2063-70. Epub 2009 Jun 5.PMID: 19502588 [PubMed - indexed for MEDLINE]Related articles

Predicting protein complexes from PPI data: a core-attachment approach.

Leung HC, Xiang Q, Yiu SM, Chin FY.

J Comput Biol. 2009 Feb;16(2):133-44.PMID: 19193141 [PubMed - indexed for MEDLINE]Related articles

Making sense of high-throughput protein-protein interaction data.

Scholtens D, Gentleman R.

Stat Appl Genet Mol Biol. 2004;3:Article39. Epub 2005 Jan 3.PMID: 16646819 [PubMed]Related articlesFree article

Development of a high-throughput method for the systematic identification of human proteins nuclear translocation potential.

Hoat TX, Bertin N, Ninomiya N, Fukuda S, Usui K, Kawai J, Hayashizaki Y, Suzuki H.

BMC Cell Biol. 2009 Sep 22;10:69.PMID: 19772597 [PubMed - indexed for MEDLINE]Related articlesFree article

Pushing structural information into the yeast interactome by high-throughput protein docking experiments.

Mosca R, Pons C, Fernández-Recio J, Aloy P.

PLoS Comput Biol. 2009 Aug;5(8):e1000490. Epub 2009 Aug 28.PMID: 19714207 [PubMed - indexed for MEDLINE]Related articlesFree article