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    Results: 1 to 20 of 187

    1.

    Proteomics studies confirm the presence of alternative protein isoforms on a large scale.

    Tress ML, Bodenmiller B, Aebersold R, Valencia A.

    Genome Biol. 2008;9(11):R162. Epub 2008 Nov 18.

    PMID:
    19017398
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Structural genomics analysis of alternative splicing and application to isoform structure modeling.

    Wang P, Yan B, Guo JT, Hicks C, Xu Y.

    Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):18920-5. Epub 2005 Dec 14.

    PMID:
    16354838
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation.

    Loevenich SN, Brunner E, King NL, Deutsch EW, Stein SE; FlyBase Consortium, Aebersold R, Hafen E.

    BMC Bioinformatics. 2009 Feb 11;10:59.

    PMID:
    19210778
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Detection of alternative splice variants at the proteome level in Aspergillus flavus.

    Chang KY, Georgianna DR, Heber S, Payne GA, Muddiman DC.

    J Proteome Res. 2010 Mar 5;9(3):1209-17.

    PMID:
    20047314
    [PubMed - indexed for MEDLINE]
    5.

    Effect of exonic splicing regulation on synonymous codon usage in alternatively spliced exons of Dscam.

    Takahashi A.

    BMC Evol Biol. 2009 Aug 27;9:214.

    PMID:
    19709440
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila.

    Hansen KD, Lareau LF, Blanchette M, Green RE, Meng Q, Rehwinkel J, Gallusser FL, Izaurralde E, Rio DC, Dudoit S, Brenner SE.

    PLoS Genet. 2009 Jun;5(6):e1000525. Epub 2009 Jun 19.

    PMID:
    19543372
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    The human basonuclin 2 gene has the potential to generate nearly 90,000 mRNA isoforms encoding over 2000 different proteins.

    Vanhoutteghem A, Djian P.

    Genomics. 2007 Jan;89(1):44-58. Epub 2006 Aug 30.

    PMID:
    16942855
    [PubMed - indexed for MEDLINE]
    8.

    Modular proteins from the Drosophila sallimus (sls) gene and their expression in muscles with different extensibility.

    Burkart C, Qiu F, Brendel S, Benes V, Hååg P, Labeit S, Leonard K, Bullard B.

    J Mol Biol. 2007 Apr 6;367(4):953-69. Epub 2007 Jan 27.

    PMID:
    17316686
    [PubMed - indexed for MEDLINE]
    9.

    ASAP: the Alternative Splicing Annotation Project.

    Lee C, Atanelov L, Modrek B, Xing Y.

    Nucleic Acids Res. 2003 Jan 1;31(1):101-5.

    PMID:
    12519958
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    The neuron-enriched splicing pattern of Drosophila erect wing is dependent on the presence of ELAV protein.

    Koushika SP, Soller M, White K.

    Mol Cell Biol. 2000 Mar;20(5):1836-45.

    PMID:
    10669758
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Investigating protein isoforms via proteomics: a feasibility study.

    Blakeley P, Siepen JA, Lawless C, Hubbard SJ.

    Proteomics. 2010 Mar;10(6):1127-40.

    PMID:
    20077415
    [PubMed - indexed for MEDLINE]
    12.

    Trans-splicing in Drosophila.

    Pirrotta V.

    Bioessays. 2002 Nov;24(11):988-91.

    PMID:
    12386928
    [PubMed - indexed for MEDLINE]
    13.

    The implications of alternative splicing in the ENCODE protein complement.

    Tress ML, Martelli PL, Frankish A, Reeves GA, Wesselink JJ, Yeats C, Olason PI, Albrecht M, Hegyi H, Giorgetti A, Raimondo D, Lagarde J, Laskowski RA, López G, Sadowski MI, Watson JD, Fariselli P, Rossi I, Nagy A, Kai W, Størling Z, Orsini M, Assenov Y, Blankenburg H, Huthmacher C, Ramírez F, Schlicker A, Denoeud F, Jones P, Kerrien S, Orchard S, Antonarakis SE, Reymond A, Birney E, Brunak S, Casadio R, Guigo R, Harrow J, Hermjakob H, Jones DT, Lengauer T, Orengo CA, Patthy L, Thornton JM, Tramontano A, Valencia A.

    Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5495-500. Epub 2007 Mar 19.

    PMID:
    17372197
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Alternative splicing of lola generates 19 transcription factors controlling axon guidance in Drosophila.

    Goeke S, Greene EA, Grant PK, Gates MA, Crowner D, Aigaki T, Giniger E.

    Nat Neurosci. 2003 Sep;6(9):917-24.

    PMID:
    12897787
    [PubMed - indexed for MEDLINE]
    15.

    The variable transmembrane domain of Drosophila N-cadherin regulates adhesive activity.

    Yonekura S, Ting CY, Neves G, Hung K, Hsu SN, Chiba A, Chess A, Lee CH.

    Mol Cell Biol. 2006 Sep;26(17):6598-608.

    PMID:
    16914742
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome.

    Brosch M, Saunders GI, Frankish A, Collins MO, Yu L, Wright J, Verstraten R, Adams DJ, Harrow J, Choudhary JS, Hubbard T.

    Genome Res. 2011 May;21(5):756-67. Epub 2011 Apr 1.

    PMID:
    21460061
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome.

    Severing EI, van Dijk AD, Stiekema WJ, van Ham RC.

    BMC Genomics. 2009 Apr 9;10:154.

    PMID:
    19358722
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data.

    Mo F, Hong X, Gao F, Du L, Wang J, Omenn GS, Lin B.

    BMC Bioinformatics. 2008 Dec 16;9:537.

    PMID:
    19087293
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    DEDB: a database of Drosophila melanogaster exons in splicing graph form.

    Lee BT, Tan TW, Ranganathan S.

    BMC Bioinformatics. 2004 Dec 7;5:189.

    PMID:
    15581431
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals.

    Nakao M, Barrero RA, Mukai Y, Motono C, Suwa M, Nakai K.

    Nucleic Acids Res. 2005 Apr 28;33(8):2355-63. Print 2005.

    PMID:
    15860772
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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