PubMed

A salmonid EST genomic study: genes, duplications, phylogeny and microarrays.

Koop BF, von Schalburg KR, Leong J, Walker N, Lieph R, Cooper GA, Robb A, Beetz-Sargent M, Holt RA, Moore R, Brahmbhatt S, Rosner J, Rexroad CE 3rd, McGowan CR, Davidson WS.

BMC Genomics. 2008 Nov 17;9:545.PMID: 19014685 [PubMed - indexed for MEDLINE]Related articlesFree article

Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics.

Rise ML, von Schalburg KR, Brown GD, Mawer MA, Devlin RH, Kuipers N, Busby M, Beetz-Sargent M, Alberto R, Gibbs AR, Hunt P, Shukin R, Zeznik JA, Nelson C, Jones SR, Smailus DE, Jones SJ, Schein JE, Marra MA, Butterfield YS, Stott JM, Ng SH, Davidson WS, Koop BF.

Genome Res. 2004 Mar;14(3):478-90. Epub 2004 Feb 12.PMID: 14962987 [PubMed - indexed for MEDLINE]Related articlesFree article

Development and application of a real-time quantitative PCR assay for determining CYP1A transcripts in three genera of salmonids.

Rees CB, Li W.

Aquat Toxicol. 2004 Mar 10;66(4):357-68.PMID: 15168944 [PubMed - indexed for MEDLINE]Related articles

Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon).

Danzmann RG, Davidson EA, Ferguson MM, Gharbi K, Koop BF, Hoyheim B, Lien S, Lubieniecki KP, Moghadam HK, Park J, Phillips RB, Davidson WS.

BMC Genomics. 2008 Nov 25;9:557.PMID: 19032764 [PubMed - indexed for MEDLINE]Related articlesFree article

Fish and chips: various methodologies demonstrate utility of a 16,006-gene salmonid microarray.

von Schalburg KR, Rise ML, Cooper GA, Brown GD, Gibbs AR, Nelson CC, Davidson WS, Koop BF.

BMC Genomics. 2005 Sep 15;6:126.PMID: 16164747 [PubMed - indexed for MEDLINE]Related articlesFree article

Characterization of 954 bovine full-CDS cDNA sequences.

Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP.

BMC Genomics. 2005 Nov 23;6:166.PMID: 16305752 [PubMed - indexed for MEDLINE]Related articlesFree article

A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences.

Trick M, Cheung F, Drou N, Fraser F, Lobenhofer EK, Hurban P, Magusin A, Town CD, Bancroft I.

BMC Plant Biol. 2009 May 8;9:50.PMID: 19426481 [PubMed - indexed for MEDLINE]Related articlesFree article

Annotated expressed sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource.

Adzhubei AA, Vlasova AV, Hagen-Larsen H, Ruden TA, Laerdahl JK, Høyheim B.

BMC Genomics. 2007 Jul 2;8:209.PMID: 17605782 [PubMed - indexed for MEDLINE]Related articlesFree article

Transcribed Tc1-like transposons in salmonid fish.

Krasnov A, Koskinen H, Afanasyev S, Mölsä H.

BMC Genomics. 2005 Aug 12;6:107.PMID: 16095544 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolution of Hox clusters in Salmonidae: a comparative analysis between Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss).

Moghadam HK, Ferguson MM, Danzmann RG.

J Mol Evol. 2005 Nov;61(5):636-49. Epub 2005 Sep 30.PMID: 16205980 [PubMed - indexed for MEDLINE]Related articles

A comparative analysis of the rainbow trout genome with 2 other species of fish (Arctic charr and Atlantic salmon) within the tetraploid derivative Salmonidae family (subfamily: Salmoninae).

Danzmann RG, Cairney M, Davidson WS, Ferguson MM, Gharbi K, Guyomard R, Holm LE, Leder E, Okamoto N, Ozaki A, Rexroad CE 3rd, Sakamoto T, Taggart JB, Woram RA.

Genome. 2005 Dec;48(6):1037-51.PMID: 16391673 [PubMed - indexed for MEDLINE]Related articles

Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome.

Quinn NL, Levenkova N, Chow W, Bouffard P, Boroevich KA, Knight JR, Jarvie TP, Lubieniecki KP, Desany BA, Koop BF, Harkins TT, Davidson WS.

BMC Genomics. 2008 Aug 28;9:404.PMID: 18755037 [PubMed - indexed for MEDLINE]Related articlesFree article

A highly redundant BAC library of Atlantic salmon (Salmo salar): an important tool for salmon projects.

Thorsen J, Zhu B, Frengen E, Osoegawa K, de Jong PJ, Koop BF, Davidson WS, Høyheim B.

BMC Genomics. 2005 Apr 4;6(1):50.PMID: 15807896 [PubMed - indexed for MEDLINE]Related articlesFree article

Genomic organization of the IGF1, IGF2, MYF5, MYF6 and GRF/PACAP genes across Salmoninae genera.

Moghadam HK, Ferguson MM, Rexroad CE 3rd, Coulibaly I, Danzmann RG.

Anim Genet. 2007 Oct;38(5):527-32.PMID: 17894566 [PubMed - indexed for MEDLINE]Related articles

Generation and analysis of large-scale expressed sequence tags (ESTs) from a full-length enriched cDNA library of porcine backfat tissue.

Kim TH, Kim NS, Lim D, Lee KT, Oh JH, Park HS, Jang GW, Kim HY, Jeon M, Choi BH, Lee HY, Chung HY, Kim H.

BMC Genomics. 2006 Feb 27;7:36.PMID: 16504160 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparative genome analysis of the primary sex-determining locus in salmonid fishes.

Woram RA, Gharbi K, Sakamoto T, Hoyheim B, Holm LE, Naish K, McGowan C, Ferguson MM, Phillips RB, Stein J, Guyomard R, Cairney M, Taggart JB, Powell R, Davidson W, Danzmann RG.

Genome Res. 2003 Feb;13(2):272-80.PMID: 12566405 [PubMed - indexed for MEDLINE]Related articlesFree article

Peanut gene expression profiling in developing seeds at different reproduction stages during Aspergillus parasiticus infection.

Guo B, Chen X, Dang P, Scully BT, Liang X, Holbrook CC, Yu J, Culbreath AK.

BMC Dev Biol. 2008 Feb 4;8:12.PMID: 18248674 [PubMed - indexed for MEDLINE]Related articlesFree article

A comparative mitogenomic analysis of the potential adaptive value of Arctic charr mtDNA introgression in brook charr populations (Salvelinus fontinalis Mitchill).

Doiron S, Bernatchez L, Blier PU.

Mol Biol Evol. 2002 Nov;19(11):1902-9.PMID: 12411599 [PubMed - indexed for MEDLINE]Related articlesFree article

Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase.

Fleury E, Huvet A, Lelong C, de Lorgeril J, Boulo V, Gueguen Y, Bachère E, Tanguy A, Moraga D, Fabioux C, Lindeque P, Shaw J, Reinhardt R, Prunet P, Davey G, Lapègue S, Sauvage C, Corporeau C, Moal J, Gavory F, Wincker P, Moreews F, Klopp C, Mathieu M, Boudry P, Favrel P.

BMC Genomics. 2009 Jul 29;10:341.PMID: 19640306 [PubMed - indexed for MEDLINE]Related articlesFree article

Rainbow smelt (Osmerus mordax) genomic library and EST resources.

von Schalburg KR, Leong J, Cooper GA, Robb A, Beetz-Sargent MR, Lieph R, Holt RA, Moore R, Ewart KV, Driedzic WR, ten Hallers BF, Zhu B, de Jong PJ, Davidson WS, Koop BF.

Mar Biotechnol (NY). 2008 Sep-Oct;10(5):487-91. Epub 2008 Apr 2.PMID: 18386095 [PubMed - indexed for MEDLINE]Related articlesFree article