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    Results: 1 to 20 of 120

    1.

    Boolean network simulations for life scientists.

    Albert I, Thakar J, Li S, Zhang R, Albert R.

    Source Code Biol Med. 2008 Nov 14;3:16.PMID: 19014577 [PubMed - in process]Related articlesFree article

    2.

    ChemChains: a platform for simulation and analysis of biochemical networks aimed to laboratory scientists.

    Helikar T, Rogers JA.

    BMC Syst Biol. 2009 Jun 6;3:58.PMID: 19500393 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    SysBioMed report: advancing systems biology for medical applications.

    Wolkenhauer O, Fell D, De Meyts P, Blüthgen N, Herzel H, Le Novère N, Höfer T, Schürrle K, van Leeuwen I.

    IET Syst Biol. 2009 May;3(3):131-6.PMID: 19449974 [PubMed - indexed for MEDLINE]Related articles

    4.

    SNAVI: Desktop application for analysis and visualization of large-scale signaling networks.

    Ma'ayan A, Jenkins SL, Webb RL, Berger SI, Purushothaman SP, Abul-Husn NS, Posner JM, Flores T, Iyengar R.

    BMC Syst Biol. 2009 Jan 20;3:10.PMID: 19154595 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Computational disease modeling - fact or fiction?

    Tegnér JN, Compte A, Auffray C, An G, Cedersund G, Clermont G, Gutkin B, Oltvai ZN, Stephan KE, Thomas R, Villoslada P.

    BMC Syst Biol. 2009 Jun 4;3:56.PMID: 19497118 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    KiPar, a tool for systematic information retrieval regarding parameters for kinetic modelling of yeast metabolic pathways.

    Spasic I, Simeonidis E, Messiha HL, Paton NW, Kell DB.

    Bioinformatics. 2009 Jun 1;25(11):1404-11. Epub 2009 Mar 31.PMID: 19336445 [PubMed - indexed for MEDLINE]Related articles

    7.

    A new journal - "Theoretical Biology and Medical Modelling".

    Wheatley DN.

    Theor Biol Med Model. 2005 Jun 12;2:21.PMID: 15949046 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Boolean modeling of neural systems with point-process inputs and outputs. Part I: theory and simulations.

    Marmarelis VZ, Zanos TP, Berger TW.

    Ann Biomed Eng. 2009 Aug;37(8):1654-67. Epub 2009 Jun 11.PMID: 19517238 [PubMed - indexed for MEDLINE]Related articles

    9.

    Ingeneue: a software tool to simulate and explore genetic regulatory networks.

    Kim KJ.

    Methods Mol Biol. 2009;500:169-200.PMID: 19399429 [PubMed - indexed for MEDLINE]Related articles

    10.

    Bioclipse 2: a scriptable integration platform for the life sciences.

    Spjuth O, Alvarsson J, Berg A, Eklund M, Kuhn S, Mäsak C, Torrance G, Wagener J, Willighagen EL, Steinbeck C, Wikberg JE.

    BMC Bioinformatics. 2009 Dec 3;10:397.PMID: 19958528 [PubMed - in process]Related articlesFree article

    11.

    On the long-run sensitivity of probabilistic Boolean networks.

    Qian X, Dougherty ER.

    J Theor Biol. 2009 Apr 21;257(4):560-77. Epub 2008 Dec 31.PMID: 19168076 [PubMed - in process]Related articles

    12.

    Dynamical modeling of the cholesterol regulatory pathway with Boolean networks.

    Kervizic G, Corcos L.

    BMC Syst Biol. 2008 Nov 24;2:99.PMID: 19025648 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations.

    Corander J, Marttinen P, Sirén J, Tang J.

    BMC Bioinformatics. 2008 Dec 16;9:539.PMID: 19087322 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    The role of theoretical modeling in microcirculation research.

    Secomb TW, Beard DA, Frisbee JC, Smith NP, Pries AR.

    Microcirculation. 2008 Nov;15(8):693-8. Review.PMID: 18946803 [PubMed - indexed for MEDLINE]Related articles

    15.

    Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data.

    Jaitly N, Mayampurath A, Littlefield K, Adkins JN, Anderson GA, Smith RD.

    BMC Bioinformatics. 2009 Mar 17;10:87.PMID: 19292916 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Mining, modeling, and evaluation of subnetworks from large biomolecular networks and its comparison study.

    Hu X, Ng M, Wu FX, Sokhansanj BA.

    IEEE Trans Inf Technol Biomed. 2009 Mar;13(2):184-94.PMID: 19272861 [PubMed - indexed for MEDLINE]Related articles

    17.

    Boolean modeling of collective effects in complex networks.

    Norrell J, Socolar JE.

    Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jun;79(6 Pt 1):061908. Epub 2009 Jun 8.PMID: 19658525 [PubMed - indexed for MEDLINE]Related articles

    18.

    Complex molecular assemblies at hand via interactive simulations.

    Delalande O, Férey N, Grasseau G, Baaden M.

    J Comput Chem. 2009 Nov 30;30(15):2375-87.PMID: 19353597 [PubMed - indexed for MEDLINE]Related articles

    19.

    Boolean modeling of collective effects in complex networks.

    Norrell J, Socolar JE.

    Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jun 8;79(6):nihpa131303.PMID: 19649269 [PubMed]Related articlesFree article

    20.

    TinkerCell: modular CAD tool for synthetic biology.

    Chandran D, Bergmann FT, Sauro HM.

    J Biol Eng. 2009 Oct 29;3:19.PMID: 19874625 [PubMed - in process]Related articlesFree article

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