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Exon definition as a potential negative force against intron losses in evolution.

Niu DK.

Biol Direct. 2008 Nov 13;3:46.PMID: 19014515 [PubMed - indexed for MEDLINE]Related articlesFree article

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Investigating the intron recognition mechanism in eukaryotes.

Collins L, Penny D; SMBE Tri-National Young Investigators.

Mol Biol Evol. 2006 May;23(5):901-10. Epub 2005 Dec 21.PMID: 16371412 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational analysis of splicing errors and mutations in human transcripts.

Kurmangaliyev YZ, Gelfand MS.

BMC Genomics. 2008 Jan 14;9:13.PMID: 18194514 [PubMed - indexed for MEDLINE]Related articlesFree article

Compensatory relationship between splice sites and exonic splicing signals depending on the length of vertebrate introns.

Dewey CN, Rogozin IB, Koonin EV.

BMC Genomics. 2006 Dec 8;7:311.PMID: 17156453 [PubMed - indexed for MEDLINE]Related articlesFree article

G triplets located throughout a class of small vertebrate introns enforce intron borders and regulate splice site selection.

McCullough AJ, Berget SM.

Mol Cell Biol. 1997 Aug;17(8):4562-71.PMID: 9234714 [PubMed - indexed for MEDLINE]Related articlesFree article

Evidence of splice signal migration from exon to intron during intron evolution.

Sverdlov AV, Rogozin IB, Babenko VN, Koonin EV.

Curr Biol. 2003 Dec 16;13(24):2170-4.PMID: 14680632 [PubMed - indexed for MEDLINE]Related articles

Large introns in relation to alternative splicing and gene evolution: a case study of Drosophila bruno-3.

Kandul NP, Noor MA.

BMC Genet. 2009 Oct 19;10:67.PMID: 19840385 [PubMed - indexed for MEDLINE]Related articlesFree article

The 5' leader of plant PgiC has an intron: the leader shows both the loss and maintenance of constraints compared with introns and exons in the coding region.

Gottlieb LD, Ford VS.

Mol Biol Evol. 2002 Sep;19(9):1613-23.PMID: 12200488 [PubMed - indexed for MEDLINE]Related articlesFree article

The architecture of pre-mRNAs affects mechanisms of splice-site pairing.

Fox-Walsh KL, Dou Y, Lam BJ, Hung SP, Baldi PF, Hertel KJ.

Proc Natl Acad Sci U S A. 2005 Nov 8;102(45):16176-81. Epub 2005 Oct 31.PMID: 16260721 [PubMed - indexed for MEDLINE]Related articlesFree article

Test of the combinatorial model of intron recognition in a native maize gene.

Latijnhouwers MJ, Pairoba CF, Brendel V, Walbot V, Carle-Urisote JC.

Plant Mol Biol. 1999 Nov;41(5):637-44.PMID: 10645723 [PubMed - indexed for MEDLINE]Related articles

Intron-exon structures of eukaryotic model organisms.

Deutsch M, Long M.

Nucleic Acids Res. 1999 Aug 1;27(15):3219-28.PMID: 10454621 [PubMed - indexed for MEDLINE]Related articlesFree article

mRNA-mediated intron losses: evidence from extraordinarily large exons.

Niu DK, Hou WR, Li SW.

Mol Biol Evol. 2005 Jun;22(6):1475-81. Epub 2005 Mar 23.PMID: 15788745 [PubMed - indexed for MEDLINE]Related articlesFree article

Intron definition is required for excision of the minute virus of mice small intron and definition of the upstream exon.

Haut DD, Pintel DJ.

J Virol. 1998 Mar;72(3):1834-43.PMID: 9499034 [PubMed - indexed for MEDLINE]Related articlesFree article

Evidence for splice site pairing via intron definition in Schizosaccharomyces pombe.

Romfo CM, Alvarez CJ, van Heeckeren WJ, Webb CJ, Wise JA.

Mol Cell Biol. 2000 Nov;20(21):7955-70.PMID: 11027266 [PubMed - indexed for MEDLINE]Related articlesFree article

Patterns of exon-intron architecture variation of genes in eukaryotic genomes.

Zhu L, Zhang Y, Zhang W, Yang S, Chen JQ, Tian D.

BMC Genomics. 2009 Jan 24;10:47.PMID: 19166620 [PubMed - indexed for MEDLINE]Related articlesFree article

Intron self-complementarity enforces exon inclusion in a yeast pre-mRNA.

Howe KJ, Ares M Jr.

Proc Natl Acad Sci U S A. 1997 Nov 11;94(23):12467-72.PMID: 9356473 [PubMed - indexed for MEDLINE]Related articlesFree article

Architectural limits on split genes.

Sterner DA, Carlo T, Berget SM.

Proc Natl Acad Sci U S A. 1996 Dec 24;93(26):15081-5.PMID: 8986767 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis of evolution of exon-intron structure of eukaryotic genes.

Rogozin IB, Sverdlov AV, Babenko VN, Koonin EV.

Brief Bioinform. 2005 Jun;6(2):118-34. Review.PMID: 15975222 [PubMed - indexed for MEDLINE]Related articlesFree article

Transposition and exon shuffling by group II intron RNA molecules in pieces.

Hiller R, Hetzer M, Schweyen RJ, Mueller MW.

J Mol Biol. 2000 Mar 24;297(2):301-8.PMID: 10715202 [PubMed - indexed for MEDLINE]Related articles

Finding exonic islands in a sea of non-coding sequence: splicing related constraints on protein composition and evolution are common in intron-rich genomes.

Warnecke T, Parmley JL, Hurst LD.

Genome Biol. 2008;9(2):R29. Epub 2008 Feb 7.PMID: 18257921 [PubMed - indexed for MEDLINE]Related articlesFree article