PubMed

A comprehensive functional analysis of tissue specificity of human gene expression.

Dezso Z, Nikolsky Y, Sviridov E, Shi W, Serebriyskaya T, Dosymbekov D, Bugrim A, Rakhmatulin E, Brennan RJ, Guryanov A, Li K, Blake J, Samaha RR, Nikolskaya T.

BMC Biol. 2008 Nov 12;6:49.PMID: 19014478 [PubMed - indexed for MEDLINE]Related articlesFree article

Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles.

Prieto C, Risueño A, Fontanillo C, De las Rivas J.

PLoS One. 2008;3(12):e3911. Epub 2008 Dec 15.PMID: 19081792 [PubMed - indexed for MEDLINE]Related articlesFree article

Definition, conservation and epigenetics of housekeeping and tissue-enriched genes.

She X, Rohl CA, Castle JC, Kulkarni AV, Johnson JM, Chen R.

BMC Genomics. 2009 Jun 17;10:269.PMID: 19534766 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli.

Gutierrez-Ríos RM, Freyre-Gonzalez JA, Resendis O, Collado-Vides J, Saier M, Gosset G.

BMC Microbiol. 2007 Jun 8;7:53.PMID: 17559662 [PubMed - indexed for MEDLINE]Related articlesFree article

Linking gene expression and functional network data in human heart failure.

Camargo A, Azuaje F.

PLoS One. 2007 Dec 19;2(12):e1347.PMID: 18094754 [PubMed - indexed for MEDLINE]Related articlesFree article

Novel functional view of the crocidolite asbestos-treated A549 human lung epithelial transcriptome reveals an intricate network of pathways with opposing functions.

Hevel JM, Olson-Buelow LC, Ganesan B, Stevens JR, Hardman JP, Aust AE.

BMC Genomics. 2008 Aug 7;9:376.PMID: 18687144 [PubMed - indexed for MEDLINE]Related articlesFree article

Knowledge-guided multi-scale independent component analysis for biomarker identification.

Chen L, Xuan J, Wang C, Shih IeM, Wang Y, Zhang Z, Hoffman E, Clarke R.

BMC Bioinformatics. 2008 Oct 6;9:416.PMID: 18837990 [PubMed - indexed for MEDLINE]Related articlesFree article

Tissue-specific mRNA expression profiling in grape berry tissues.

Grimplet J, Deluc LG, Tillett RL, Wheatley MD, Schlauch KA, Cramer GR, Cushman JC.

BMC Genomics. 2007 Jun 21;8:187.PMID: 17584945 [PubMed - indexed for MEDLINE]Related articlesFree article

In silico identification and comparative analysis of differentially expressed genes in human and mouse tissues.

Pao SY, Lin WL, Hwang MJ.

BMC Genomics. 2006 Apr 21;7:86.PMID: 16626500 [PubMed - indexed for MEDLINE]Related articlesFree article

Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data.

Grigoriadis A, Mackay A, Reis-Filho JS, Steele D, Iseli C, Stevenson BJ, Jongeneel CV, Valgeirsson H, Fenwick K, Iravani M, Leao M, Simpson AJ, Strausberg RL, Jat PS, Ashworth A, Neville AM, O'Hare MJ.

Breast Cancer Res. 2006;8(5):R56.PMID: 17014703 [PubMed - indexed for MEDLINE]Related articlesFree article

An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer.

Xu M, Kao MC, Nunez-Iglesias J, Nevins JR, West M, Zhou XJ.

BMC Genomics. 2008;9 Suppl 1:S12.PMID: 18366601 [PubMed - indexed for MEDLINE]Related articlesFree article

Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes.

Reverter A, Ingham A, Dalrymple BP.

BioData Min. 2008 Sep 19;1(1):8.PMID: 18822114 [PubMed - in process]Related articlesFree article

Global similarity and local divergence in human and mouse gene co-expression networks.

Tsaparas P, Mariño-Ramírez L, Bodenreider O, Koonin EV, Jordan IK.

BMC Evol Biol. 2006 Sep 12;6:70.PMID: 16968540 [PubMed - indexed for MEDLINE]Related articlesFree article

Topological and organizational properties of the products of house-keeping and tissue-specific genes in protein-protein interaction networks.

Lin WH, Liu WC, Hwang MJ.

BMC Syst Biol. 2009 Mar 11;3:32.PMID: 19284572 [PubMed - indexed for MEDLINE]Related articlesFree article

The functional landscape of mouse gene expression.

Zhang W, Morris QD, Chang R, Shai O, Bakowski MA, Mitsakakis N, Mohammad N, Robinson MD, Zirngibl R, Somogyi E, Laurin N, Eftekharpour E, Sat E, Grigull J, Pan Q, Peng WT, Krogan N, Greenblatt J, Fehlings M, van der Kooy D, Aubin J, Bruneau BG, Rossant J, Blencowe BJ, Frey BJ, Hughes TR.

J Biol. 2004;3(5):21. Epub 2004 Dec 6.PMID: 15588312 [PubMed - indexed for MEDLINE]Related articlesFree article

Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates.

Fujita A, Gomes LR, Sato JR, Yamaguchi R, Thomaz CE, Sogayar MC, Miyano S.

BMC Syst Biol. 2008 Dec 5;2:106.PMID: 19055846 [PubMed - indexed for MEDLINE]Related articlesFree article

Promoter features related to tissue specificity as measured by Shannon entropy.

Schug J, Schuller WP, Kappen C, Salbaum JM, Bucan M, Stoeckert CJ Jr.

Genome Biol. 2005;6(4):R33. Epub 2005 Mar 29.PMID: 15833120 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome-wide profiling of gene expression in 29 normal human tissues with a cDNA microarray.

Saito-Hisaminato A, Katagiri T, Kakiuchi S, Nakamura T, Tsunoda T, Nakamura Y.

DNA Res. 2002 Apr 30;9(2):35-45.PMID: 12056413 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene co-expression network topology provides a framework for molecular characterization of cellular state.

Carter SL, Brechbühler CM, Griffin M, Bond AT.

Bioinformatics. 2004 Sep 22;20(14):2242-50. Epub 2004 May 6.PMID: 15130938 [PubMed - indexed for MEDLINE]Related articlesFree article

D-Serine exposure resulted in gene expression changes indicative of activation of fibrogenic pathways and down-regulation of energy metabolism and oxidative stress response.

Soto A, DelRaso NJ, Schlager JJ, Chan VT.

Toxicology. 2008 Jan 14;243(1-2):177-92. Epub 2007 Oct 23.PMID: 18061331 [PubMed - indexed for MEDLINE]Related articles