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    Results: 1 to 20 of 115

    1.

    Syntenator: multiple gene order alignments with a gene-specific scoring function.

    Rödelsperger C, Dieterich C.

    Algorithms Mol Biol. 2008 Nov 6;3:14.PMID: 18990215 [PubMed]Related articlesFree article

    2.

    CYNTENATOR: progressive gene order alignment of 17 vertebrate genomes.

    Rödelsperger C, Dieterich C.

    PLoS One. 2010 Jan 28;5(1):e8861.PMID: 20126624 [PubMed - in process]Related articlesFree article

    3.

    Domain team: synteny of domains is a new approach in comparative genomics.

    Pasek S.

    Methods Mol Biol. 2007;396:17-29.PMID: 18025683 [PubMed - indexed for MEDLINE]Related articles

    4.

    Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms.

    Sinha AU, Meller J.

    BMC Bioinformatics. 2007 Mar 8;8:82.PMID: 17343765 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level.

    Chiapello H, Gendrault A, Caron C, Blum J, Petit MA, El Karoui M.

    BMC Bioinformatics. 2008 Nov 27;9:498.PMID: 19038022 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Positional homology in bacterial genomes.

    Burgetz IJ, Shariff S, Pang A, Tillier ER.

    Evol Bioinform Online. 2007 Jan 14;2:77-90.PMID: 19455203 [PubMed - in process]Related articlesFree article

    7.

    Multiple whole-genome alignments without a reference organism.

    Dubchak I, Poliakov A, Kislyuk A, Brudno M.

    Genome Res. 2009 Apr;19(4):682-9. Epub 2009 Jan 28.PMID: 19176791 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human.

    Goodstadt L, Ponting CP.

    PLoS Comput Biol. 2006 Sep 29;2(9):e133.PMID: 17009864 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Accurate identification of orthologous segments among multiple genomes.

    Hachiya T, Osana Y, Popendorf K, Sakakibara Y.

    Bioinformatics. 2009 Apr 1;25(7):853-60. Epub 2009 Feb 2. Erratum in: Bioinformatics. 2009 Jun 1;25(11):1474. PMID: 19188192 [PubMed - indexed for MEDLINE]Related articles

    10.

    SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes.

    Lemoine F, Labedan B, Lespinet O.

    BMC Bioinformatics. 2008 Dec 16;9:536.PMID: 19087285 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    OrthoClusterDB: an online platform for synteny blocks.

    Ng MP, Vergara IA, Frech C, Chen Q, Zeng X, Pei J, Chen N.

    BMC Bioinformatics. 2009 Jun 23;10:192.PMID: 19549318 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    NcDNAlign: plausible multiple alignments of non-protein-coding genomic sequences.

    Rose D, Hertel J, Reiche K, Stadler PF, Hackermüller J.

    Genomics. 2008 Jul;92(1):65-74. Epub 2008 Jun 3.PMID: 18511233 [PubMed - indexed for MEDLINE]Related articles

    13.

    Identification of mammalian orthologs using local synteny.

    Jun J, Mandoiu II, Nelson CE.

    BMC Genomics. 2009 Dec 23;10:630.PMID: 20030836 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes.

    Bertioli DJ, Moretzsohn MC, Madsen LH, Sandal N, Leal-Bertioli SC, Guimarães PM, Hougaard BK, Fredslund J, Schauser L, Nielsen AM, Sato S, Tabata S, Cannon SB, Stougaard J.

    BMC Genomics. 2009 Jan 23;10:45.PMID: 19166586 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Multiple genome alignment for identifying the core structure among moderately related microbial genomes.

    Uchiyama I.

    BMC Genomics. 2008 Oct 31;9:515.PMID: 18976470 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Databases of homologous gene families for comparative genomics.

    Penel S, Arigon AM, Dufayard JF, Sertier AS, Daubin V, Duret L, Gouy M, Perrière G.

    BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S3.PMID: 19534752 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    OrthoSelect: a protocol for selecting orthologous groups in phylogenomics.

    Schreiber F, Pick K, Erpenbeck D, Wörheide G, Morgenstern B.

    BMC Bioinformatics. 2009 Jul 16;10:219.PMID: 19607672 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    SynBlast: assisting the analysis of conserved synteny information.

    Lehmann J, Stadler PF, Prohaska SJ.

    BMC Bioinformatics. 2008 Aug 24;9:351.PMID: 18721485 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    EDGAR: a software framework for the comparative analysis of prokaryotic genomes.

    Blom J, Albaum SP, Doppmeier D, Pühler A, Vorhölter FJ, Zakrzewski M, Goesmann A.

    BMC Bioinformatics. 2009 May 20;10:154.PMID: 19457249 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Finding conserved gene order across multiple genomes.

    Pavesi G, Pesole G.

    Methods Mol Biol. 2007;396:111-9.PMID: 18025689 [PubMed - indexed for MEDLINE]Related articles

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