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    Results: 1 to 20 of 99

    1.

    Pseudofam: the pseudogene families database.

    Lam HY, Khurana E, Fang G, Cayting P, Carriero N, Cheung KH, Gerstein MB.

    Nucleic Acids Res. 2009 Jan;37(Database issue):D738-43. Epub 2008 Oct 28.PMID: 18957444 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation.

    Karro JE, Yan Y, Zheng D, Zhang Z, Carriero N, Cayting P, Harrrison P, Gerstein M.

    Nucleic Acids Res. 2007 Jan;35(Database issue):D55-60. Epub 2006 Nov 11.PMID: 17099229 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    SUPFAM--a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes.

    Pandit SB, Gosar D, Abhiman S, Sujatha S, Dixit SS, Mhatre NS, Sowdhamini R, Srinivasan N.

    Nucleic Acids Res. 2002 Jan 1;30(1):289-93.PMID: 11752317 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22.

    Harrison PM, Hegyi H, Balasubramanian S, Luscombe NM, Bertone P, Echols N, Johnson T, Gerstein M.

    Genome Res. 2002 Feb;12(2):272-80.PMID: 11827946 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    The Pfam protein families database.

    Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D281-8. Epub 2007 Nov 26.PMID: 18039703 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    The Pfam protein families database.

    Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL.

    Nucleic Acids Res. 2002 Jan 1;30(1):276-80.PMID: 11752314 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Studying genomes through the aeons: protein families, pseudogenes and proteome evolution.

    Harrison PM, Gerstein M.

    J Mol Biol. 2002 May 17;318(5):1155-74. Review.PMID: 12083509 [PubMed - indexed for MEDLINE]Related articles

    8.

    TreeFam: a curated database of phylogenetic trees of animal gene families.

    Li H, Coghlan A, Ruan J, Coin LJ, Hériché JK, Osmotherly L, Li R, Liu T, Zhang Z, Bolund L, Wong GK, Zheng W, Dehal P, Wang J, Durbin R.

    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D572-80.PMID: 16381935 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes.

    Echols N, Harrison P, Balasubramanian S, Luscombe NM, Bertone P, Zhang Z, Gerstein M.

    Nucleic Acids Res. 2002 Jun 1;30(11):2515-23.PMID: 12034841 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    TOBFAC: the database of tobacco transcription factors.

    Rushton PJ, Bokowiec MT, Laudeman TW, Brannock JF, Chen X, Timko MP.

    BMC Bioinformatics. 2008 Jan 25;9:53.PMID: 18221524 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    PALI-a database of Phylogeny and ALIgnment of homologous protein structures.

    Balaji S, Sujatha S, Kumar SS, Srinivasan N.

    Nucleic Acids Res. 2001 Jan 1;29(1):61-5.PMID: 11125050 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    CNVVdb: a database of copy number variations across vertebrate genomes.

    Chen FC, Chen YZ, Chuang TJ.

    Bioinformatics. 2009 Jun 1;25(11):1419-21. Epub 2009 Mar 25.PMID: 19321736 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    PseudoPipe: an automated pseudogene identification pipeline.

    Zhang Z, Carriero N, Zheng D, Karro J, Harrison PM, Gerstein M.

    Bioinformatics. 2006 Jun 15;22(12):1437-9. Epub 2006 Mar 30.PMID: 16574694 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    A comparison of sequence and structure protein domain families as a basis for structural genomics.

    Elofsson A, Sonnhammer EL.

    Bioinformatics. 1999 Jun;15(6):480-500.PMID: 10383473 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome.

    Harrison PM, Echols N, Gerstein MB.

    Nucleic Acids Res. 2001 Feb 1;29(3):818-30.PMID: 11160906 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    MODBASE, a database of annotated comparative protein structure models, and associated resources.

    Pieper U, Eswar N, Braberg H, Madhusudhan MS, Davis FP, Stuart AC, Mirkovic N, Rossi A, Marti-Renom MA, Fiser A, Webb B, Greenblatt D, Huang CC, Ferrin TE, Sali A.

    Nucleic Acids Res. 2004 Jan 1;32(Database issue):D217-22.PMID: 14681398 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    PseudoGeneQuest - service for identification of different pseudogene types in the human genome.

    Ortutay C, Vihinen M.

    BMC Bioinformatics. 2008 Jul 2;9:299.PMID: 18597685 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    ProClass Protein Family Database.

    Wu CH, Shivakumar S, Huang H.

    Nucleic Acids Res. 1999 Jan 1;27(1):272-4.PMID: 9847199 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

    Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

    BMC Bioinformatics. 2007 Apr 19;8:129.PMID: 17445272 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny.

    Wilson D, Pethica R, Zhou Y, Talbot C, Vogel C, Madera M, Chothia C, Gough J.

    Nucleic Acids Res. 2009 Jan;37(Database issue):D380-6. Epub 2008 Nov 26.PMID: 19036790 [PubMed - indexed for MEDLINE]Related articlesFree article

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