PubMed

Matching curated genome databases: a non trivial task.

Descorps-Declère S, Barba M, Labedan B.

BMC Genomics. 2008 Oct 24;9:501.PMID: 18950477 [PubMed - indexed for MEDLINE]Related articlesFree article

[Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes]

Zhang DL, Ji L, Li YD.

Yi Chuan Xue Bao. 2004 May;31(5):431-43. Chinese. PMID: 15478601 [PubMed - indexed for MEDLINE]Related articles

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.

Pruitt KD, Tatusova T, Maglott DR.

Nucleic Acids Res. 2007 Jan;35(Database issue):D61-5. Epub 2006 Nov 27.PMID: 17130148 [PubMed - indexed for MEDLINE]Related articlesFree article

MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes.

Cruveiller S, Le Saux J, Vallenet D, Lajus A, Bocs S, Médigue C.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W471-9.PMID: 15980515 [PubMed - indexed for MEDLINE]Related articlesFree article

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.

Pruitt KD, Tatusova T, Maglott DR.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.PMID: 15608248 [PubMed - indexed for MEDLINE]Related articlesFree article

ORFer--retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files.

Büssow K, Hoffmann S, Sievert V.

BMC Bioinformatics. 2002 Dec 19;3:40. Epub 2002 Dec 19.PMID: 12493080 [PubMed - indexed for MEDLINE]Related articlesFree article

[Correction of five different types of errors of model REFSEQs appeared in NCBI human gene database only by using two novel human genes C17orf32 and ZNF362]

Zhang DL, Li YD, Ji L.

Yi Chuan Xue Bao. 2004 Apr;31(4):325-34. Chinese. PMID: 15487498 [PubMed - indexed for MEDLINE]Related articles

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.

Côté RG, Jones P, Martens L, Kerrien S, Reisinger F, Lin Q, Leinonen R, Apweiler R, Hermjakob H.

BMC Bioinformatics. 2007 Oct 18;8:401.PMID: 17945017 [PubMed - indexed for MEDLINE]Related articlesFree article

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.PMID: 17445272 [PubMed - indexed for MEDLINE]Related articlesFree article

Restauro-G: a rapid genome re-annotation system for comparative genomics.

Tamaki S, Arakawa K, Kono N, Tomita M.

Genomics Proteomics Bioinformatics. 2007 Feb;5(1):53-8.PMID: 17572364 [PubMed - indexed for MEDLINE]Related articles

Remote access to ACNUC nucleotide and protein sequence databases at PBIL.

Gouy M, Delmotte S.

Biochimie. 2008 Apr;90(4):555-62. Epub 2007 Jul 15.PMID: 17825976 [PubMed - indexed for MEDLINE]Related articles

The EMBL Nucleotide Sequence Database.

Stoesser G, Baker W, van den Broek A, Camon E, Garcia-Pastor M, Kanz C, Kulikova T, Leinonen R, Lin Q, Lombard V, Lopez R, Redaschi N, Stoehr P, Tuli MA, Tzouvara K, Vaughan R.

Nucleic Acids Res. 2002 Jan 1;30(1):21-6.PMID: 11752244 [PubMed - indexed for MEDLINE]Related articlesFree article

HmtDB, a human mitochondrial genomic resource based on variability studies supporting population genetics and biomedical research.

Attimonelli M, Accetturo M, Santamaria M, Lascaro D, Scioscia G, Pappadà G, Russo L, Zanchetta L, Tommaseo-Ponzetta M.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S4.PMID: 16351753 [PubMed - indexed for MEDLINE]Related articlesFree article

GATA: a graphic alignment tool for comparative sequence analysis.

Nix DA, Eisen MB.

BMC Bioinformatics. 2005 Jan 17;6:9.PMID: 15655071 [PubMed - indexed for MEDLINE]Related articlesFree article

Dictionary-driven protein annotation.

Rigoutsos I, Huynh T, Floratos A, Parida L, Platt D.

Nucleic Acids Res. 2002 Sep 1;30(17):3901-16.PMID: 12202776 [PubMed - indexed for MEDLINE]Related articlesFree article

GenColors: accelerated comparative analysis and annotation of prokaryotic genomes at various stages of completeness.

Romualdi A, Siddiqui R, Glöckner G, Lehmann R, Sühnel J.

Bioinformatics. 2005 Sep 15;21(18):3669-71. Epub 2005 Aug 2.PMID: 16076887 [PubMed - indexed for MEDLINE]Related articlesFree article

Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes.

Bocs S, Danchin A, Médigue C.

BMC Bioinformatics. 2002;3:5. Epub 2002 Feb 5.PMID: 11879526 [PubMed - indexed for MEDLINE]Related articlesFree article

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

BMC Bioinformatics. 2006 Nov 23;7:513.PMID: 17123449 [PubMed - indexed for MEDLINE]Related articlesFree article

AgBase: a functional genomics resource for agriculture.

McCarthy FM, Wang N, Magee GB, Nanduri B, Lawrence ML, Camon EB, Barrell DG, Hill DP, Dolan ME, Williams WP, Luthe DS, Bridges SM, Burgess SC.

BMC Genomics. 2006 Sep 8;7:229.PMID: 16961921 [PubMed - indexed for MEDLINE]Related articlesFree article

CASCAD: a database of annotated candidate single nucleotide polymorphisms associated with expressed sequences.

Guryev V, Berezikov E, Cuppen E.

BMC Genomics. 2005 Jan 27;6(1):10.PMID: 15676075 [PubMed - indexed for MEDLINE]Related articlesFree article