PubMed

DNA damage in preserved specimens and tissue samples: a molecular assessment.

Zimmermann J, Hajibabaei M, Blackburn DC, Hanken J, Cantin E, Posfai J, Evans TC Jr.

Front Zool. 2008 Oct 23;5:18.PMID: 18947416 [PubMed - in process]Related articlesFree article

Formamide as a denaturant for bisulfite conversion of genomic DNA: Bisulfite sequencing of the GSTPi and RARbeta2 genes of 43 formalin-fixed paraffin-embedded prostate cancer specimens.

Zon G, Barker MA, Kaur P, Groshen S, Jones LW, Imam SA, Boyd VL.

Anal Biochem. 2009 Sep 15;392(2):117-25. Epub 2009 Jun 6.PMID: 19505431 [PubMed - indexed for MEDLINE]Related articles

Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis.

Schweiger MR, Kerick M, Timmermann B, Albrecht MW, Borodina T, Parkhomchuk D, Zatloukal K, Lehrach H.

PLoS One. 2009;4(5):e5548. Epub 2009 May 14.PMID: 19440246 [PubMed - indexed for MEDLINE]Related articlesFree article

Amplification of chromosomal translocation junctions from paraffin-embedded tissues of follicular lymphoma patients.

Nambiar M, Choudhary B, Rao CR, Raghavan SC.

Biomed Mater. 2008 Sep;3(3):034103. Epub 2008 Aug 8.PMID: 18689919 [PubMed - indexed for MEDLINE]Related articles

Imaging mass spectrometry of intact proteins from alcohol-preserved tissue specimens: bypassing formalin fixation.

Chaurand P, Latham JC, Lane KB, Mobley JA, Polosukhin VV, Wirth PS, Nanney LB, Caprioli RM.

J Proteome Res. 2008 Aug;7(8):3543-55. Epub 2008 Jul 10.PMID: 18613713 [PubMed - indexed for MEDLINE]Related articles

Protein extraction of formalin-fixed, paraffin-embedded tissue enables robust proteomic profiles by mass spectrometry.

Scicchitano MS, Dalmas DA, Boyce RW, Thomas HC, Frazier KS.

J Histochem Cytochem. 2009 Sep;57(9):849-60. Epub 2009 May 26.PMID: 19471015 [PubMed - indexed for MEDLINE]Related articlesFree article

[STR genotyping in unbuffered formalin fixed paraffin embedded tissue]

Liu Y, Li L, Zhao ZM, Zhang SH, Zhao SM.

Fa Yi Xue Za Zhi. 2009 Oct;25(5):337-40, 344. Chinese. PMID: 20000040 [PubMed - in process]Related articles

Amplification of cox2 (approximately 620 bp) from 2 mg of up to 129 years old herbarium specimens, comparing 19 extraction methods and 15 polymerases.

Telle S, Thines M.

PLoS One. 2008;3(10):e3584. Epub 2008 Oct 31.PMID: 18974835 [PubMed - indexed for MEDLINE]Related articlesFree article

Non-invasive sampling methods for the detection of Batrachochytrium dendrobatidis in archived amphibians.

Soto-Azat C, Clarke BT, Fisher MC, Walker SF, Cunningham AA.

Dis Aquat Organ. 2009 Apr 6;84(2):163-6.PMID: 19476287 [PubMed - indexed for MEDLINE]Related articles

An efficient protocol for genomic DNA extraction from formalin-fixed paraffin-embedded tissues.

Santos S, Sá D, Bastos E, Guedes-Pinto H, Gut I, Gärtner F, Chaves R.

Res Vet Sci. 2009 Jun;86(3):421-6. Epub 2008 Oct 15.PMID: 18926550 [PubMed - indexed for MEDLINE]Related articles

Rapid isolation of DNA from fresh and preserved fish scales for polymerase chain reaction.

Yue GH, Orban L.

Mar Biotechnol (NY). 2001 May;3(3):199-204.PMID: 14961356 [PubMed]Related articles

Oligonucleotide probe array for p53 gene alteration analysis in DNA from formalin-fixed paraffin-embedded breast cancer tissues.

Lumachi F, Marino F, Varotto S, Basso U.

Ann N Y Acad Sci. 2009 Sep;1175:89-92.PMID: 19796081 [PubMed - indexed for MEDLINE]Related articles

Quantification of damage in DNA recovered from highly degraded samples--a case study on DNA in faeces.

Deagle BE, Eveson JP, Jarman SN.

Front Zool. 2006 Aug 16;3:11.PMID: 16911807 [PubMed]Related articlesFree article

Interim and archival preservation of plant specimens in alcohols for DNA studies.

Flournoy LE, Adams RP, Pandy RN.

Biotechniques. 1996 Apr;20(4):657-60.PMID: 8800686 [PubMed - indexed for MEDLINE]Related articles

Extraction of cellular DNA from human cells and tissues fixed in ethanol.

Smith LJ, Braylan RC, Nutkis JE, Edmundson KB, Downing JR, Wakeland EK.

Anal Biochem. 1987 Jan;160(1):135-8.PMID: 3551684 [PubMed - indexed for MEDLINE]Related articles

A Novel Cross-Disciplinary Multi-Institute Approach to Translational Cancer Research: Lessons Learned from Pennsylvania Cancer Alliance Bioinformatics Consortium (PCABC).

Patel AA, Gilbertson JR, Showe LC, London JW, Ross E, Ochs MF, Carver J, Lazarus A, Parwani AV, Dhir R, Beck JR, Liebman M, Garcia FU, Prichard J, Wilkerson M, Herberman RB, Becich MJ; the PCABC.

Cancer Inform. 2007 Jun 8;3:255-274.PMID: 19455246 [PubMed - as supplied by publisher]Related articlesFree article

DNA extraction from dry museum beetles without conferring external morphological damage.

Gilbert MT, Moore W, Melchior L, Worobey M.

PLoS One. 2007 Mar 7;2(3):e272.PMID: 17342206 [PubMed - in process]Related articlesFree article

Proteomics on Fixed Tissue Specimens - A Review.

Reimel BA, Pan S, May DH, Shaffer SA, Goodlett DR, McIntosh MW, Yerian LM, Bronner MP, Chen R, Brentnall TA.

Curr Proteomics. 2009 Apr 1;6(1):63-69.PMID: 19829741 [PubMed]Related articlesFree article

Field preservation and DNA extraction methods for intestinal microbial diversity analysis in earthworms.

Thakuria D, Schmidt O, Liliensiek AK, Egan D, Doohan FM.

J Microbiol Methods. 2009 Mar;76(3):226-33. Epub 2008 Nov 11.PMID: 19038293 [PubMed - indexed for MEDLINE]Related articles

Primer: tissue fixation and preservation for optimal molecular analysis of urologic tissues.

Foster CS, Gosden CM, Ke YQ.

Nat Clin Pract Urol. 2006 May;3(5):268-78. Review.PMID: 16691240 [PubMed - indexed for MEDLINE]Related articles